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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.294513 (39 seq.)
>W1710796655
LJSH01000002
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
110
185
+
Thr
CGT
[ENA]
¡û
>W1710865554
LMGT01000007
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
63679
63604
-
Thr
CGT
[ENA]
¡û
>W1710877292
LMPZ01000001
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
170996
170921
-
Thr
CGT
[ENA]
¡û
>W1711082182
LSTR01000026
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
189401
189476
+
Thr
CGT
[ENA]
¡û
>W1711083842
LSVG01000007
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
50880
50805
-
Thr
CGT
[ENA]
¡û
>C171088728
CP019044
Alphaproteobacteria
Salaquimonas pukyongi RR3-28 [CP019044]
3110051
3109976
-
Thr
CGT
-
¡û
>W131052396
AMYX01000089
Alphaproteobacteria
alpha proteobacterium LLX12A [AMYX]
12581
12656
+
Thr
CGT
[ENA]
¡û
>WENV181227373
OFDN01008509
[OFDN] hot springs metagenome; Water
308
383
+
Thr
CGT
[ENA]
¢þ
>WENV181227810
OFDN01049049
[OFDN] hot springs metagenome; Water
737
662
-
Thr
CGT
[ENA]
¢þ
>WENV181233578
OFET01000010
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
110
185
+
Thr
CGT
[ENA]
¢þ
>WENV182569354
OJEY01021052
[OJEY] seawater metagenome; Sea water
159
84
-
Thr
CGT
[ENA]
¢þ
>WENV182576809
OJFY01012545
[OJFY] seawater metagenome; Sea water
441
516
+
Thr
CGT
[ENA]
¢þ
>WENV182587831
OJHN01017478
[OJHN] seawater metagenome; Sea water
196
121
-
Thr
CGT
[ENA]
¢þ
>WENV183734239
PJTZ01000343
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
4488
4413
-
Thr
CGT
[ENA]
¢þ
>WENV183736947
PJUD01000117
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
87274
87349
+
Thr
CGT
[ENA]
¢þ
>WENV170326316
CEST01173542
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
75
1
-
Thr
CGT
[ENA]
¢þ
>WENV170574362
FLYM01029272
[FLYM] hot springs metagenome; Sediment
807
882
+
Thr
CGT
[ENA]
¢þ
>W141484888
JFYY01000010
Alphaproteobacteria
Sphingomonas paucimobilis [JFYY]
175872
175947
+
Thr
CGT
[ENA]
¡û
>C181047596
CP020925
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [CP020925]
5031854
5031779
-
Thr
CGT
-
¡û
>C181089664
CP023741
Alphaproteobacteria
Sphingobium yanoikuyae S72 [CP023741]
144636
144711
+
Thr
CGT
-
¡û
>C191003800
AP018664
Alphaproteobacteria
Sphingobium amiense DSM 16289 [AP018664]
1985857
1985782
-
Thr
CGT
-
¡û
>W141520477
JGVR01000070
Alphaproteobacteria
Sphingobium yanoikuyae [JGVR]
1268
1193
-
Thr
CGT
[ENA]
¡û
>C191063613
CP029335
Alphaproteobacteria
Sphingobium sp. LF-16 [CP029335]
125607
125682
+
Thr
CGT
-
¡û
>C191103893
CP033230
Alphaproteobacteria
Sphingobium yanoikuyae SJTF8 [CP033230]
4717889
4717964
+
Thr
CGT
-
¡û
>C191163676
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
1709885
1709960
+
Thr
CGT
-
¡û
>W141726133
JNAC01000033
Alphaproteobacteria
Sphingobium sp. DC-2 [JNAC]
7503
7428
-
Thr
CGT
[ENA]
¡û
>W1910889706
NETV01000001
Alphaproteobacteria
Sphingobium sp. LB126 [NETV]
2453186
2453261
+
Thr
CGT
[ENA]
¡û
>W1911114847
NOIW01000155
Alphaproteobacteria
Sphingobium sp. IP1 [NOIW]
8220
8295
+
Thr
CGT
[ENA]
¡û
>W1911688291
QLJK01000007
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
125926
125851
-
Thr
CGT
[ENA]
¡û
>W1810787278
QRDP01000004
Alphaproteobacteria
Parasphingopyxis lamellibrachiae DSM 26725 [QRDP]
1751997
1751922
-
Thr
CGT
[ENA]
¡û
>SRA1047957
SRR035094.75574
454 Sequencing (SRP001815)
334
259
-
Thr
CGT
[SRA]
>C10102231
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
410439
410364
-
Thr
CGT
[Ensembl]
¡û
>C10111658
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
930847
930922
+
Thr
CGT
[Ensembl]
¡û
>W1510941342
JFFT01000019
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [JFFT]
372
297
-
Thr
CGT
[ENA]
¡û
>W1610660612
LJSH01000002
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
110
185
+
Thr
CGT
[ENA]
¡û
>W1610727900
LMGT01000007
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
63679
63604
-
Thr
CGT
[ENA]
¡û
>W1610739638
LMPZ01000001
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
170996
170921
-
Thr
CGT
[ENA]
¡û
>W1610920967
LSTR01000026
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
189401
189476
+
Thr
CGT
[ENA]
¡û
>W1610922595
LSVG01000007
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
50880
50805
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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