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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29454 (59 seq.)
>W1710815717
LKKM01000028
Gammaproteobacteria
Pseudomonas sp. TTU2014-105ASC [LKKM]
30210
30299
+
Ser
GGA
[ENA]
¡û
>W1711083774
LSVE01000067
Gammaproteobacteria
Stutzerimonas stutzeri [LSVE]
99852
99763
-
Ser
GGA
[ENA]
¡û
>W1711178797
LWHA01000015
Gammaproteobacteria
Pseudomonas seleniipraecipitans punonensis [LWHA]
76263
76352
+
Ser
GGA
[ENA]
¡û
>W1711268768
LZDG02000048
Gammaproteobacteria
Pseudomonas sp. AU11447 [LZDG]
114291
114202
-
Ser
GGA
[ENA]
¡û
>W1711339550
MCAL01000015
Gammaproteobacteria
Pseudomonas sp. K35 [MCAL]
2447
2536
+
Ser
GGA
[ENA]
¡û
>W1711344767
MCNJ01000072
Gammaproteobacteria
Pseudomonas sp. CO183 [MCNJ]
13352
13263
-
Ser
GGA
[ENA]
¡û
>W131086599
AOBS01000059
Gammaproteobacteria
Stutzerimonas stutzeri NF13 [AOBS]
25257
25346
+
Ser
GGA
[ENA]
¡û
>W1711421673
MHZI01000116
Gammaproteobacteria
Pseudomonadales bacterium GWC2_63_15 [MHZI]
4745
4834
+
Ser
GGA
[ENA]
¡û
>W1711708792
MSXU01000015
Gammaproteobacteria
Pseudomonas sp. PA1(2017) [MSXU]
415839
415750
-
Ser
GGA
[ENA]
¡û
>W1711708815
MSXV01000025
Gammaproteobacteria
Pseudomonas sp. PA15(2017) [MSXV]
40282
40371
+
Ser
GGA
[ENA]
¡û
>W1711708903
MSXW01000054
Gammaproteobacteria
Pseudomonas sp. PA27(2017) [MSXW]
37285
37196
-
Ser
GGA
[ENA]
¡û
>W1711744396
MUHV01000005
Gammaproteobacteria
Pseudomonas sp. T [MUHV]
597798
597887
+
Ser
GGA
[ENA]
¡û
>W1712056322
NFZU01000008
Gammaproteobacteria
Stutzerimonas stutzeri [NFZU]
30617
30706
+
Ser
GGA
[ENA]
¡û
>W141042060
AMCZ02000032
Gammaproteobacteria
Stutzerimonas stutzeri KOS6 [AMCZ]
44389
44478
+
Ser
GGA
[ENA]
¡û
>W141054747
AOFQ01000073
Gammaproteobacteria
Stutzerimonas chloritidismutans AW-1 [AOFQ]
48022
47933
-
Ser
GGA
[ENA]
¡û
>WENV181375108
OFQY01047104
[OFQY] wastewater metagenome; Exp Tend VB 10WW
173
84
-
Ser
GGA
[ENA]
¢þ
>WENV181384571
OFRI01002909
[OFRI] wastewater metagenome; Exp Tend VB 90WW
310
221
-
Ser
GGA
[ENA]
¢þ
>WENV181388740
OFRM01033762
[OFRM] wastewater metagenome; Exp Tend VB 0WW
853
764
-
Ser
GGA
[ENA]
¢þ
>WENV181398990
OFSE01006041
[OFSE] wastewater metagenome; Exp Tend VB 50WW
512
423
-
Ser
GGA
[ENA]
¢þ
>W141214464
AZSV01000018
Gammaproteobacteria
Pseudomonas sp. BAY1663 [AZSV]
28384
28473
+
Ser
GGA
[ENA]
¡û
>W141217319
AZVM01000002
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I4 [AZVM]
496302
496391
+
Ser
GGA
[ENA]
¡û
>WENV170121530
CENM01039359
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
123
34
-
Ser
GGA
[ENA]
¢þ
>WENV170136574
CENV01050430
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3157
3068
-
Ser
GGA
[ENA]
¢þ
>WENV170201353
CEPQ01014677
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
10432
10343
-
Ser
GGA
[ENA]
¢þ
>WENV170520726
CEWF01003344
[CEWF] marine metagenome genome assembly TARA_122_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
726
637
-
Ser
GGA
[ENA]
¢þ
>WENV170705882
LNAP01000566
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
34024
33935
-
Ser
GGA
[ENA]
¢þ
>C181155726
CP027543
Gammaproteobacteria
Stutzerimonas stutzeri DW2-1 [CP027543]
565300
565389
+
Ser
GGA
-
¡û
>C191211869
LR134482
Gammaproteobacteria
Stutzerimonas stutzeri NCTC10475 [LR134482]
2749558
2749647
+
Ser
GGA
-
¡û
>W1910010985
BDJA01000005
Gammaproteobacteria
Pseudomonas sp. SCT [BDJA]
346345
346256
-
Ser
GGA
[ENA]
¡û
>W1911681279
QJUH01000015
Gammaproteobacteria
Pseudomonas sp. FRB 228 P2A [QJUH]
33621
33532
-
Ser
GGA
[ENA]
¡û
>W1911681329
QJUI01000010
Gammaproteobacteria
Pseudomonas daroniae P9A [QJUI]
33621
33532
-
Ser
GGA
[ENA]
¡û
>W1911681395
QJUJ01000009
Gammaproteobacteria
Pseudomonas daroniae P18A [QJUJ]
154126
154215
+
Ser
GGA
[ENA]
¡û
>W1911681437
QJUK01000007
Gammaproteobacteria
Pseudomonas daroniae P23A [QJUK]
33667
33578
-
Ser
GGA
[ENA]
¡û
>W1810149424
PISM01000014
Gammaproteobacteria
Stutzerimonas kunmingensis BUN14 [PISM]
809991
809902
-
Ser
GGA
[ENA]
¡û
>W1810169354
PJJZ01000001
Gammaproteobacteria
Stutzerimonas stutzeri DSM 50227 [PJJZ]
25322
25411
+
Ser
GGA
[ENA]
¡û
>W1810224306
POUI01000002
Gammaproteobacteria
Stutzerimonas decontaminans ST27MN3 [POUI]
544752
544663
-
Ser
GGA
[ENA]
¡û
>W1810224516
POUM01000007
Gammaproteobacteria
Stutzerimonas stutzeri CCUG 44592 [POUM]
190057
189968
-
Ser
GGA
[ENA]
¡û
>W1810224576
POUN01000003
Gammaproteobacteria
Stutzerimonas stutzeri KC [POUN]
857259
857170
-
Ser
GGA
[ENA]
¡û
>W1810224981
POUT01000021
Gammaproteobacteria
Stutzerimonas stutzeri 24a75 [POUT]
29096
29007
-
Ser
GGA
[ENA]
¡û
>W1810225073
POUV01000010
Gammaproteobacteria
Stutzerimonas kunmingensis CCUG 36651 [POUV]
212507
212418
-
Ser
GGA
[ENA]
¡û
>W1810242748
PPXG01000005
Gammaproteobacteria
Stutzerimonas stutzeri 24a13 [PPXG]
442918
442829
-
Ser
GGA
[ENA]
¡û
>W1810684869
QKYW01000011
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I2 [QKYW]
135183
135272
+
Ser
GGA
[ENA]
¡û
>C151025989
CP007509
Gammaproteobacteria
Stutzerimonas stutzeri 19SMN4 [CP007509]
2945573
2945662
+
Ser
GGA
[Ensembl]
¡û
>W1510061165
CCYE01000008
Gammaproteobacteria
Stutzerimonas xanthomarina S11 [CCYE]
49616
49527
-
Ser
GGA
[ENA]
¡û
>W1511429982
JUEC02000137
Gammaproteobacteria
[Pseudomonas] sp. BICA1-14 BICA1-14 [JUEC]
36722
36811
+
Ser
GGA
[ENA]
¡û
>W1511505173
JXJL01000033
Gammaproteobacteria
Stutzerimonas stutzeri ST-9 [JXJL]
15365
15454
+
Ser
GGA
[ENA]
¡û
>W1511517204
JXXD01000091
Gammaproteobacteria
Stutzerimonas stutzeri BAL361 [JXXD]
9392
9481
+
Ser
GGA
[ENA]
¡û
>C121015000
CP003677
Gammaproteobacteria
Stutzerimonas stutzeri CCUG 29243 [CP003677]
1957125
1957036
-
Ser
GGA
[Ensembl]
¡û
>W121017972
AGSL01000069
Gammaproteobacteria
Stutzerimonas stutzeri ATCC 14405 = CCUG 16156 [AGSL]
17815
17904
+
Ser
GGA
[ENA]
¡û
>C131001976
CP003071
Gammaproteobacteria
Stutzerimonas stutzeri RCH2 [CP003071]
2911404
2911493
+
Ser
GGA
[Ensembl]
¡û
>W1610679814
LKKM01000028
Gammaproteobacteria
Pseudomonas sp. TTU2014-105ASC [LKKM]
30210
30299
+
Ser
GGA
[ENA]
¡û
>W1610922527
LSVE01000067
Gammaproteobacteria
Stutzerimonas stutzeri [LSVE]
99852
99763
-
Ser
GGA
[ENA]
¡û
>W1611029580
LZDG02000048
Gammaproteobacteria
Pseudomonas sp. AU11447 [LZDG]
114291
114202
-
Ser
GGA
[ENA]
¡û
>W1710075800
BCZZ01000032
Gammaproteobacteria
Pseudomonas flavescens NBRC 103044 [BCZZ]
36406
36317
-
Ser
GGA
[ENA]
¡û
>W1710515104
FNBM01000009
Gammaproteobacteria
Pseudomonas seleniipraecipitans [FNBM]
44152
44063
-
Ser
GGA
[ENA]
¡û
>W1710517388
FNDG01000032
Gammaproteobacteria
Pseudomonas flavescens [FNDG]
13040
13129
+
Ser
GGA
[ENA]
¡û
>W1710565266
FORC01000001
Gammaproteobacteria
Pseudomonas argentinensis [FORC]
36617
36528
-
Ser
GGA
[ENA]
¡û
>W1710566038
FORS01000001
Gammaproteobacteria
Stutzerimonas kunmingensis [FORS]
14683
14772
+
Ser
GGA
[ENA]
¡û
>W1710591343
FRBQ01000002
Gammaproteobacteria
Pseudomonas punonensis [FRBQ]
655341
655430
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK