This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29482 (44 seq.)
>W1710872810
LMMH01000001
Alphaproteobacteria
Sphingomonas sp. Leaf257 [LMMH]
187291
187202
-
Ser
CGA
[ENA]
¡û
>W1711055218
LRUK01000040
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
30961
30872
-
Ser
CGA
[ENA]
¡û
>W1711662298
MQUI01000015
Alphaproteobacteria
Sphingomonas sp. Sph1(2015) [MQUI]
5781
5870
+
Ser
CGA
[ENA]
¡û
>C171029667
CP013916
Alphaproteobacteria
Sphingomonas sp. LK11 [CP013916]
1201356
1201445
+
Ser
CGA
-
¡û
>C171108867
CP020538
Alphaproteobacteria
Sphingobium herbicidovorans MH [CP020538]
2074601
2074690
+
Ser
CGA
-
¡û
>W131196344
ASTG01000007
Alphaproteobacteria
Sphingobium bisphenolivorans YL23 [ASTG]
147915
148004
+
Ser
CGA
[ENA]
¡û
>W131224726
AUDA01000115
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
10918
10829
-
Ser
CGA
[ENA]
¡û
>W131224737
AUDA01000160
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
87259
87170
-
Ser
CGA
[ENA]
¡û
>W131224743
AUDA01000200
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
90
1
-
Ser
CGA
[ENA]
¡û
>WENV180082546
MPMC02233537
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
4899
4810
-
Ser
CGA
[ENA]
¢þ
>WENV180087520
MPME02097116
[MPME] marine metagenome; 150 m water sample filtered on 30 um supor filter
476
565
+
Ser
CGA
[ENA]
¢þ
>WENV180396586
OBPV01025582
[OBPV] marine metagenome; ENVO:00002010
60
149
+
Ser
CGA
[ENA]
¢þ
>W141076288
ATDO01000086
Alphaproteobacteria
Sphingobium sp. HDIP04 [ATDO]
85952
85863
-
Ser
CGA
[ENA]
¡û
>W141078086
ATHO01000014
Alphaproteobacteria
Sphingobium quisquiliarum P25 [ATHO]
70095
70006
-
Ser
CGA
[ENA]
¡û
>W141078466
ATIB01000071
Alphaproteobacteria
Sphingobium baderi LL03 [ATIB]
77527
77438
-
Ser
CGA
[ENA]
¡û
>W141231027
BATN01000040
Alphaproteobacteria
Sphingobium fuliginis KK22 [BATN]
30022
30111
+
Ser
CGA
[ENA]
¡û
>W141237815
BBJS01000007
Alphaproteobacteria
Sphingomonas paucimobilis NBRC 13935 [BBJS]
126899
126988
+
Ser
CGA
[ENA]
¡û
>WENV170660844
JXWU01045128
[JXWU] soil metagenome; rice field; organic control Plot
375
286
-
Ser
CGA
[ENA]
¢þ
>W141462307
JFHR01000024
Alphaproteobacteria
Sphingobium chlorophenolicum [JFHR]
44326
44415
+
Ser
CGA
[ENA]
¡û
>W141484990
JFZA02000014
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [JFZA]
53284
53195
-
Ser
CGA
[ENA]
¡û
>C181186361
CP029985
Alphaproteobacteria
Sphingomonas sp. FARSPH [CP029985]
2308361
2308450
+
Ser
CGA
-
¡û
>C191146360
CP035765
Alphaproteobacteria
Sphingomonas paucimobilis AIMST S2 [CP035765]
1677717
1677628
-
Ser
CGA
-
¡û
>C191185544
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
3716717
3716806
+
Ser
CGA
-
¡û
>W1910649304
LXYF01000052
Alphaproteobacteria
Sphingobium sp. SA916 [LXYF]
96268
96179
-
Ser
CGA
[ENA]
¡û
>W1911495411
OBMU01000001
Alphaproteobacteria
Novosphingobium sp. Chol11 [OBMU]
2316883
2316794
-
Ser
CGA
[ENA]
¡û
>W1810000449
BEWI01000030
Alphaproteobacteria
Sphingobium fuliginis OMI [BEWI]
114462
114373
-
Ser
CGA
[ENA]
¡û
>W1810724701
QOBC01000001
Alphaproteobacteria
Sphingomonas paucimobilis AIMST S2 [QOBC]
52483
52394
-
Ser
CGA
[ENA]
¡û
>W1510013712
BBPI01000035
Alphaproteobacteria
Sphingomonas parapaucimobilis NBRC 15100 [BBPI]
77846
77757
-
Ser
CGA
[ENA]
¡û
>C11119787
CP002798
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [CP002798, CP002799]
2630987
2631076
+
Ser
CGA
[Ensembl]
¡û
>W1511640342
LDUA01000007
Alphaproteobacteria
Sphingomonas paucimobilis LCT-SP1 [LDUA]
21151
21062
-
Ser
CGA
[ENA]
¡û
>W1511646458
LECE01000023
Alphaproteobacteria
Sphingomonas sp. MEA3-1 [LECE]
21237
21148
-
Ser
CGA
[ENA]
¡û
>C161003395
CP005188
Alphaproteobacteria
Sphingobium sp. MI1205 [CP005188, CP005189]
375990
376079
+
Ser
CGA
[Ensembl]
¡û
>C161054566
CP013264
Alphaproteobacteria
Sphingobium baderi DE-13 [CP013264]
970017
969928
-
Ser
CGA
[Ensembl]
¡û
>W1610071285
BCTY01000017
Alphaproteobacteria
Sphingomonas sanguinis NBRC 13937 [BCTY]
40259
40170
-
Ser
CGA
[ENA]
¡û
>W121071168
AJXQ01000142
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
27572
27661
+
Ser
CGA
[ENA]
¡û
>W1610592954
LDTD01000056
Alphaproteobacteria
Sphingomonas sanguinis [LDTD]
5208
5297
+
Ser
CGA
[ENA]
¡û
>W1610592982
LDTE01000022
Alphaproteobacteria
Sphingomonas sanguinis [LDTE]
5206
5295
+
Ser
CGA
[ENA]
¡û
>W1610593034
LDTF01000025
Alphaproteobacteria
Sphingomonas yabuuchiae [LDTF]
5500
5589
+
Ser
CGA
[ENA]
¡û
>W1610735156
LMMH01000001
Alphaproteobacteria
Sphingomonas sp. Leaf257 [LMMH]
187291
187202
-
Ser
CGA
[ENA]
¡û
>W1610896264
LRUK01000040
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
30961
30872
-
Ser
CGA
[ENA]
¡û
>W1710068650
BCTY01000017
Alphaproteobacteria
Sphingomonas sanguinis NBRC 13937 [BCTY]
40259
40170
-
Ser
CGA
[ENA]
¡û
>W1710712234
LDTD01000056
Alphaproteobacteria
Sphingomonas sanguinis [LDTD]
5208
5297
+
Ser
CGA
[ENA]
¡û
>W1710712262
LDTE01000022
Alphaproteobacteria
Sphingomonas sanguinis [LDTE]
5206
5295
+
Ser
CGA
[ENA]
¡û
>W1710712314
LDTF01000025
Alphaproteobacteria
Sphingomonas yabuuchiae [LDTF]
5500
5589
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK