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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.294834 (38 seq.)
>W131162937
AQZI01000002
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
263165
263240
+
Leu
TAA
[ENA]
¡û
>WENV016668
AACY020468046
Marine microbial communities from Global Ocean Sampling (GOS)
808
883
+
Leu
TAA
[ENA]
>WENV180110678
OAPN01003428
[OAPN] marine metagenome; 2011
1217
1142
-
Leu
TAA
[ENA]
¢þ
>WENV180111070
OAPN01026292
[OAPN] marine metagenome; 2011
26
99
+
Leu
TAA
[ENA]
¢þ
>WENV180113865
OAPR01039970
[OAPR] marine metagenome; seawater
196
271
+
Leu
TAA
[ENA]
¢þ
>WENV180357457
OBNN01011634
[OBNN] marine metagenome; Coastal water
326
251
-
Leu
TAA
[ENA]
¢þ
>WENV180377222
OBON01003905
[OBON] marine metagenome; sea water
623
698
+
Leu
TAA
[ENA]
¢þ
>WENV180592014
OCOV01164607
[OCOV] marine metagenome; ENVO:01000301
102
29
-
Leu
TAA
[ENA]
¢þ
>WENV181367520
OFQB01006067
[OFQB] freshwater metagenome; Freshwater Lake
182
257
+
Leu
TAA
[ENA]
¢þ
>WENV181367736
OFQC01007224
[OFQC] freshwater metagenome; Freshwater Lake
468
395
-
Leu
TAA
[ENA]
¢þ
>WENV181368224
OFQK01006314
[OFQK] freshwater metagenome; Freshwater Lake
115
190
+
Leu
TAA
[ENA]
¢þ
>WENV181368388
OFQL01001975
[OFQL] freshwater metagenome; Freshwater Lake
1060
985
-
Leu
TAA
[ENA]
¢þ
>WENV181368915
OFQN01003696
[OFQN] freshwater metagenome; Freshwater Lake
290
365
+
Leu
TAA
[ENA]
¢þ
>WENV181369385
OFQP01001048
[OFQP] freshwater metagenome; Freshwater Lake
132
207
+
Leu
TAA
[ENA]
¢þ
>WENV181369702
OFQP01024302
[OFQP] freshwater metagenome; Freshwater Lake
150
77
-
Leu
TAA
[ENA]
¢þ
>WENV181369956
OFQR01003292
[OFQR] freshwater metagenome; Freshwater Lake
210
285
+
Leu
TAA
[ENA]
¢þ
>WENV181370388
OFQS01007615
[OFQS] freshwater metagenome; Freshwater Lake
165
238
+
Leu
TAA
[ENA]
¢þ
>WENV181377002
OFRA01001172
[OFRA] wastewater metagenome; Lake Maggiore Verbania
5969
5894
-
Leu
TAA
[ENA]
¢þ
>WENV181379647
OFRD01004914
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1483
1558
+
Leu
TAA
[ENA]
¢þ
>WENV181384933
OFRI01020933
[OFRI] wastewater metagenome; Exp Tend VB 90WW
866
791
-
Leu
TAA
[ENA]
¢þ
>WENV181386051
OFRL01000439
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
9999
9924
-
Leu
TAA
[ENA]
¢þ
>WENV181395817
OFSB01006169
[OFSB] freshwater metagenome; Freshwater Lake
637
712
+
Leu
TAA
[ENA]
¢þ
>WENV181399748
OFSE01066132
[OFSE] wastewater metagenome; Exp Tend VB 50WW
400
325
-
Leu
TAA
[ENA]
¢þ
>WENV181400279
OFSF01003841
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1034
1109
+
Leu
TAA
[ENA]
¢þ
>WENV181400943
OFSF01034395
[OFSF] wastewater metagenome; Exp Tend VB 100WW
831
758
-
Leu
TAA
[ENA]
¢þ
>WENV181836804
OGVJ01031153
[OGVJ] freshwater metagenome; freshwater
411
336
-
Leu
TAA
[ENA]
¢þ
>W141202929
AZHS01000009
Actinomycetota
actinobacterium SCGC AAA041-L13 [AZHS]
37769
37844
+
Leu
TAA
[ENA]
¡û
>WENV170571748
FLOH01000288
[FLOH] marine metagenome; water
36815
36890
+
Leu
TAA
[ENA]
¢þ
>WENV170604284
FUWD010382507
[FUWD] metagenome; unknown
470
395
-
Leu
TAA
[ENA]
¢þ
>WENV170645526
JNSK01000049
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
15250
15325
+
Leu
TAA
[ENA]
¢þ
>C181018716
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
89654
89581
-
Leu
TAA
-
¡û
>C181018726
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
562862
562937
+
Leu
TAA
-
¡û
>C181020835
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
177642
177715
+
Leu
TAA
-
¡û
>C181021112
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
1166980
1166905
-
Leu
TAA
-
¡û
>C181021243
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
157540
157615
+
Leu
TAA
-
¡û
>C181021356
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
156913
156988
+
Leu
TAA
-
¡û
>WENV058208
AACY023321155
Marine microbial communities from Global Ocean Sampling (GOS)
1325
1250
-
Leu
TAA
[ENA]
>WENV074561
AACY023983015
Marine microbial communities from Global Ocean Sampling (GOS)
963
1038
+
Leu
TAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK