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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.294850 (92 seq.)
>W131158410
AQUA01000008
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
75119
75192
+
Gly
GCC
[ENA]
¡û
>W131158413
AQUA01000008
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
81795
81868
+
Gly
GCC
[ENA]
¡û
>WENV180115278
OAPS01190136
[OAPS] marine metagenome; sea water
192
119
-
Gly
GCC
[ENA]
¢þ
>WENV180310970
OBJT01071149
[OBJT] soil metagenome; soil
297
224
-
Gly
GCC
[ENA]
¢þ
>WENV180377081
OBON01000262
[OBON] marine metagenome; sea water
1556
1483
-
Gly
GCC
[ENA]
¢þ
>WENV180591263
OCOV01006369
[OCOV] marine metagenome; ENVO:01000301
431
358
-
Gly
GCC
[ENA]
¢þ
>WENV181368530
OFQL01017635
[OFQL] freshwater metagenome; Freshwater Lake
295
368
+
Gly
GCC
[ENA]
¢þ
>WENV181368817
OFQN01000883
[OFQN] freshwater metagenome; Freshwater Lake
3620
3693
+
Gly
GCC
[ENA]
¢þ
>WENV181369344
OFQP01000479
[OFQP] freshwater metagenome; Freshwater Lake
4296
4223
-
Gly
GCC
[ENA]
¢þ
>WENV181369643
OFQP01015741
[OFQP] freshwater metagenome; Freshwater Lake
79
6
-
Gly
GCC
[ENA]
¢þ
>WENV181370330
OFQS01003952
[OFQS] freshwater metagenome; Freshwater Lake
160
87
-
Gly
GCC
[ENA]
¢þ
>WENV181370398
OFQS01008393
[OFQS] freshwater metagenome; Freshwater Lake
859
932
+
Gly
GCC
[ENA]
¢þ
>WENV181370650
OFQT01001765
[OFQT] freshwater metagenome; Freshwater Lake
1732
1805
+
Gly
GCC
[ENA]
¢þ
>WENV181377090
OFRA01002329
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1467
1394
-
Gly
GCC
[ENA]
¢þ
>WENV181384568
OFRI01002862
[OFRI] wastewater metagenome; Exp Tend VB 90WW
2011
2084
+
Gly
GCC
[ENA]
¢þ
>WENV181385214
OFRI01050027
[OFRI] wastewater metagenome; Exp Tend VB 90WW
658
731
+
Gly
GCC
[ENA]
¢þ
>WENV181386741
OFRL01012438
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
1488
1561
+
Gly
GCC
[ENA]
¢þ
>WENV181395714
OFSB01000743
[OFSB] freshwater metagenome; Freshwater Lake
539
612
+
Gly
GCC
[ENA]
¢þ
>WENV181400309
OFSF01004362
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1823
1896
+
Gly
GCC
[ENA]
¢þ
>WENV181400582
OFSF01011423
[OFSF] wastewater metagenome; Exp Tend VB 100WW
841
914
+
Gly
GCC
[ENA]
¢þ
>WENV181836018
OGVJ01000061
[OGVJ] freshwater metagenome; freshwater
931
1006
+
Gly
GCC
[ENA]
¢þ
>WENV181836109
OGVJ01000863
[OGVJ] freshwater metagenome; freshwater
112
37
-
Gly
GCC
[ENA]
¢þ
>WENV181836323
OGVJ01004651
[OGVJ] freshwater metagenome; freshwater
159
86
-
Gly
GCC
[ENA]
¢þ
>WENV181836449
OGVJ01007557
[OGVJ] freshwater metagenome; freshwater
1300
1227
-
Gly
GCC
[ENA]
¢þ
>WENV181836611
OGVJ01014955
[OGVJ] freshwater metagenome; freshwater
143
70
-
Gly
GCC
[ENA]
¢þ
>WENV181838761
OGVN01016557
[OGVN] freshwater metagenome; freshwater
168
241
+
Gly
GCC
[ENA]
¢þ
>WENV181842931
OGVT01042585
[OGVT] freshwater metagenome; freshwater
125
50
-
Gly
GCC
[ENA]
¢þ
>WENV181843225
OGVU01003963
[OGVU] freshwater metagenome; freshwater
407
482
+
Gly
GCC
[ENA]
¢þ
>WENV181845356
OGVX01001771
[OGVX] freshwater metagenome; freshwater
2235
2162
-
Gly
GCC
[ENA]
¢þ
>WENV181846121
OGVX01020914
[OGVX] freshwater metagenome; freshwater
423
350
-
Gly
GCC
[ENA]
¢þ
>WENV181847989
OGVZ01001212
[OGVZ] freshwater metagenome; freshwater
24
97
+
Gly
GCC
[ENA]
¢þ
>WENV181848341
OGVZ01005687
[OGVZ] freshwater metagenome; freshwater
66
139
+
Gly
GCC
[ENA]
¢þ
>WENV181848443
OGVZ01007576
[OGVZ] freshwater metagenome; freshwater
128
55
-
Gly
GCC
[ENA]
¢þ
>WENV181848951
OGVZ01037564
[OGVZ] freshwater metagenome; freshwater
312
237
-
Gly
GCC
[ENA]
¢þ
>WENV181849214
OGVZ01066242
[OGVZ] freshwater metagenome; freshwater
79
6
-
Gly
GCC
[ENA]
¢þ
>WENV181852177
OGWF01007314
[OGWF] freshwater metagenome; freshwater
677
752
+
Gly
GCC
[ENA]
¢þ
>WENV181853454
OGWI01006163
[OGWI] freshwater metagenome; freshwater
1175
1102
-
Gly
GCC
[ENA]
¢þ
>WENV181854908
OGWK01036001
[OGWK] freshwater metagenome; freshwater
250
325
+
Gly
GCC
[ENA]
¢þ
>WENV181855735
OGWM01001122
[OGWM] freshwater metagenome; freshwater
1567
1494
-
Gly
GCC
[ENA]
¢þ
>WENV181858871
OGWP01045532
[OGWP] freshwater metagenome; freshwater
350
275
-
Gly
GCC
[ENA]
¢þ
>WENV182865787
OKRQ01002426
[OKRQ] freshwater metagenome; freshwater
321
394
+
Gly
GCC
[ENA]
¢þ
>WENV170572616
FLOH01001029
[FLOH] marine metagenome; water
1499
1426
-
Gly
GCC
[ENA]
¢þ
>WENV002046
AACY020057586
Marine microbial communities from Global Ocean Sampling (GOS)
772
697
-
Gly
GCC
[ENA]
>WENV170600169
FUWD010111691
[FUWD] metagenome; unknown
425
352
-
Gly
GCC
[ENA]
¢þ
>WENV170602035
FUWD010211193
[FUWD] metagenome; unknown
820
747
-
Gly
GCC
[ENA]
¢þ
>WENV170602669
FUWD010252157
[FUWD] metagenome; unknown
307
380
+
Gly
GCC
[ENA]
¢þ
>WENV170606410
FUWD010666609
[FUWD] metagenome; unknown
200
273
+
Gly
GCC
[ENA]
¢þ
>WENV170618332
FUWD012963054
[FUWD] metagenome; unknown
726
653
-
Gly
GCC
[ENA]
¢þ
>WENV170625676
FUWD013203169
[FUWD] metagenome; unknown
721
648
-
Gly
GCC
[ENA]
¢þ
>WENV170625828
FUWD013206723
[FUWD] metagenome; unknown
321
394
+
Gly
GCC
[ENA]
¢þ
>WENV170633898
FUWD013405204
[FUWD] metagenome; unknown
721
648
-
Gly
GCC
[ENA]
¢þ
>WENV170634048
FUWD013408469
[FUWD] metagenome; unknown
321
394
+
Gly
GCC
[ENA]
¢þ
>WENV170645479
JNSK01000003
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1911
1984
+
Gly
GCC
[ENA]
¢þ
>WENV170645499
JNSK01000020
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
47184
47257
+
Gly
GCC
[ENA]
¢þ
>WENV170645535
JNSK01000085
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8709
8636
-
Gly
GCC
[ENA]
¢þ
>C181018666
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
811310
811237
-
Gly
GCC
-
¡û
>C181018700
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
934407
934334
-
Gly
GCC
-
¡û
>C181020845
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
794856
794929
+
Gly
GCC
-
¡û
>C181020882
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
746006
746079
+
Gly
GCC
-
¡û
>C181020938
CP016771
Actinomycetota
Candidatus Nanopelagicus hibericus [CP016771]
532129
532056
-
Gly
GCC
-
¡û
>C181020956
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
751896
751969
+
Gly
GCC
-
¡û
>C181020992
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
741975
742048
+
Gly
GCC
-
¡û
>C181021028
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
712858
712931
+
Gly
GCC
-
¡û
>C181021066
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
706901
706974
+
Gly
GCC
-
¡û
>C181021140
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
731826
731899
+
Gly
GCC
-
¡û
>C181021176
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
711264
711337
+
Gly
GCC
-
¡û
>C181021254
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
755518
755591
+
Gly
GCC
-
¡û
>C181021290
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
689861
689934
+
Gly
GCC
-
¡û
>C181021367
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
766917
766990
+
Gly
GCC
-
¡û
>WENV021700
AACY020591226
Marine microbial communities from Global Ocean Sampling (GOS)
567
642
+
Gly
GCC
[ENA]
>WENV049036
AACY022766328
Marine microbial communities from Global Ocean Sampling (GOS)
505
430
-
Gly
GCC
[ENA]
>WENV049068
AACY022767826
Marine microbial communities from Global Ocean Sampling (GOS)
211
136
-
Gly
GCC
[ENA]
>WENV049124
AACY022771104
Marine microbial communities from Global Ocean Sampling (GOS)
466
391
-
Gly
GCC
[ENA]
>WENV049129
AACY022771246
Marine microbial communities from Global Ocean Sampling (GOS)
317
242
-
Gly
GCC
[ENA]
>WENV058267
AACY023323107
Marine microbial communities from Global Ocean Sampling (GOS)
595
670
+
Gly
GCC
[ENA]
>WENV005902
AACY020164735
Marine microbial communities from Global Ocean Sampling (GOS)
984
909
-
Gly
GCC
[ENA]
>WENV061574
AACY023434773
Marine microbial communities from Global Ocean Sampling (GOS)
187
262
+
Gly
GCC
[ENA]
>WENV061596
AACY023435223
Marine microbial communities from Global Ocean Sampling (GOS)
53
128
+
Gly
GCC
[ENA]
>WENV061732
AACY023438730
Marine microbial communities from Global Ocean Sampling (GOS)
202
127
-
Gly
GCC
[ENA]
>WENV006273
AACY020171088
Marine microbial communities from Global Ocean Sampling (GOS)
1646
1571
-
Gly
GCC
[ENA]
>WENV006274
AACY020171104
Marine microbial communities from Global Ocean Sampling (GOS)
71
146
+
Gly
GCC
[ENA]
>WENV006360
AACY020172191
Marine microbial communities from Global Ocean Sampling (GOS)
1486
1561
+
Gly
GCC
[ENA]
>WENV006434
AACY020173732
Marine microbial communities from Global Ocean Sampling (GOS)
1231
1306
+
Gly
GCC
[ENA]
>WENV006713
AACY020178735
Marine microbial communities from Global Ocean Sampling (GOS)
1916
1991
+
Gly
GCC
[ENA]
>WENV006726
AACY020178980
Marine microbial communities from Global Ocean Sampling (GOS)
577
502
-
Gly
GCC
[ENA]
>WENV006868
AACY020180812
Marine microbial communities from Global Ocean Sampling (GOS)
81
6
-
Gly
GCC
[ENA]
>WENV006977
AACY020182605
Marine microbial communities from Global Ocean Sampling (GOS)
3901
3976
+
Gly
GCC
[ENA]
>W1610597604
LFFA01000082
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
1272
1197
-
Gly
GCC
[ENA]
¡û
>W1610625519
LIAS01000078
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120802-bin41 [LIAS]
2622
2549
-
Gly
GCC
[ENA]
¡û
>WENV076499
AACY024099875
Marine microbial communities from Global Ocean Sampling (GOS)
318
243
-
Gly
GCC
[ENA]
>W1710718851
LFFA01000082
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
1272
1197
-
Gly
GCC
[ENA]
¡û
>W1710756646
LIAS01000078
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120802-bin41 [LIAS]
2622
2549
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK