This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.295659 (75 seq.)
>W1711302769
MAJF01000017
Campylobacterota
Helicobacter pullorum [MAJF]
843
768
-
Val
TAC
[ENA]
¡û
>W1711302803
MAJG01000023
Campylobacterota
Helicobacter pullorum [MAJG]
17718
17793
+
Val
TAC
[ENA]
¡û
>W1711306376
MANK01000019
Campylobacterota
Helicobacter pullorum [MANK]
50324
50399
+
Val
TAC
[ENA]
¡û
>W1711307538
MAOZ01000007
Campylobacterota
Helicobacter pullorum [MAOZ]
37821
37896
+
Val
TAC
[ENA]
¡û
>W1711307569
MAPA01000003
Campylobacterota
Helicobacter pullorum [MAPA]
12190
12115
-
Val
TAC
[ENA]
¡û
>W1711307657
MAPC01000017
Campylobacterota
Helicobacter pullorum [MAPC]
51240
51315
+
Val
TAC
[ENA]
¡û
>W1711307723
MAPE01000007
Campylobacterota
Helicobacter pullorum [MAPE]
50639
50714
+
Val
TAC
[ENA]
¡û
>C026918
BX571656
Campylobacterota
Wolinella succinogenes [BX571656]
178461
178386
-
Val
TAC
[Ensembl]
¡û
>WENV181197005
OEQZ01007691
[OEQZ] metagenome; Caecal content
199
274
+
Val
TAC
[ENA]
¢þ
>WENV181205144
OESA01006553
[OESA] metagenome; Caecal content
251
176
-
Val
TAC
[ENA]
¢þ
>W08010367
ABQU01000047
Campylobacterota
Helicobacter pullorum MIT 98-5489 [ABQU]
4395
4323
-
Val
TAC
[ENA]
¡û
>W141204236
AZJJ01000001
Campylobacterota
Helicobacter canis NCTC 12740 [AZJJ]
233864
233939
+
Val
TAC
[ENA]
¡û
>WENV183074109
OLIU01008568
[OLIU] human gut metagenome; stool sample
1118
1043
-
Val
TAC
[ENA]
¢þ
>WENV170635421
JDSF01015596
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
51
126
+
Val
TAC
[ENA]
¢þ
>WENV170637296
JFBN01315939
[JFBN] chicken gut metagenome; ceca of Broiler chicken
8124
8049
-
Val
TAC
[ENA]
¢þ
>W09134346
ACSF01000002
Campylobacterota
Helicobacter canadensis MIT 98-5491(ACSF) [ACSF]
369313
369238
-
Val
TAC
[ENA]
¡û
>C191000194
AP017374
Campylobacterota
Helicobacter cinaedi MRY08-1234 [AP017374]
221859
221934
+
Val
TAC
-
¡û
>C191002269
AP018446
Campylobacterota
Helicobacter cinaedi P03D0629 [AP018446]
221859
221934
+
Val
TAC
-
¡û
>C191002307
AP018447
Campylobacterota
Helicobacter cinaedi P06D0798 [AP018447]
213809
213884
+
Val
TAC
-
¡û
>W141701689
JMKW01000010
Campylobacterota
Helicobacter bilis ATCC 51630 [JMKW]
15729
15804
+
Val
TAC
[ENA]
¡û
>W1910546169
FZMJ01000014
Campylobacterota
Helicobacter cinaedi [FZMJ]
38488
38563
+
Val
TAC
[ENA]
¡û
>W1910546232
FZML01000017
Campylobacterota
Helicobacter muridarum [FZML]
128527
128602
+
Val
TAC
[ENA]
¡û
>W1910546290
FZMN01000006
Campylobacterota
Helicobacter muridarum [FZMN]
128527
128602
+
Val
TAC
[ENA]
¡û
>W1910546505
FZMS01000064
Campylobacterota
Helicobacter bilis [FZMS]
14673
14748
+
Val
TAC
[ENA]
¡û
>W1910546521
FZMT01000007
Campylobacterota
Helicobacter bilis [FZMT]
80035
80110
+
Val
TAC
[ENA]
¡û
>W1910546614
FZMV01000020
Campylobacterota
Helicobacter pullorum [FZMV]
5583
5508
-
Val
TAC
[ENA]
¡û
>W1910546662
FZMX01000005
Campylobacterota
Helicobacter pullorum [FZMX]
58150
58075
-
Val
TAC
[ENA]
¡û
>W1910546806
FZND01000071
Campylobacterota
Helicobacter trogontum [FZND]
2524
2599
+
Val
TAC
[ENA]
¡û
>W1910546884
FZNG01000002
Campylobacterota
Helicobacter trogontum [FZNG]
51824
51749
-
Val
TAC
[ENA]
¡û
>W1910549596
FZPK01000003
Campylobacterota
Helicobacter rappini [FZPK]
56018
56093
+
Val
TAC
[ENA]
¡û
>W1910549723
FZPN01000009
Campylobacterota
Helicobacter canadensis [FZPN]
36028
36103
+
Val
TAC
[ENA]
¡û
>W1910549793
FZPP01000012
Campylobacterota
Helicobacter marmotae [FZPP]
4663
4738
+
Val
TAC
[ENA]
¡û
>W1910756071
MLAM01000010
Campylobacterota
Helicobacter sp. 11S02596-1 [MLAM]
15481
15406
-
Val
TAC
[ENA]
¡û
>W1910756128
MLAO01000002
Campylobacterota
Helicobacter sp. 11S03491-1 [MLAO]
147550
147625
+
Val
TAC
[ENA]
¡û
>W1910756322
MLAT01000019
Campylobacterota
Helicobacter sp. 13S00482-2 [MLAT]
552
477
-
Val
TAC
[ENA]
¡û
>W1911770815
QXJF01000007
Campylobacterota
Helicobacter labetoulli 48519 [QXJF]
70013
70088
+
Val
TAC
[ENA]
¡û
>W1810002668
BEYY01000169
Campylobacterota
Helicobacter cinaedi P04D0736 [BEYY]
60178
60253
+
Val
TAC
[ENA]
¡û
>W1810002728
BEZB01000008
Campylobacterota
Helicobacter cinaedi P07D0876 [BEZB]
63756
63681
-
Val
TAC
[ENA]
¡û
>W1810002768
BEZC01000064
Campylobacterota
Helicobacter cinaedi P08D0905 [BEZC]
5313
5238
-
Val
TAC
[ENA]
¡û
>W1810002814
BEZD01000151
Campylobacterota
Helicobacter cinaedi P09D0927 [BEZD]
60173
60248
+
Val
TAC
[ENA]
¡û
>W1810002879
BEZF01000141
Campylobacterota
Helicobacter cinaedi P11D0946 [BEZF]
60188
60263
+
Val
TAC
[ENA]
¡û
>W1810002927
BEZG01000154
Campylobacterota
Helicobacter cinaedi P13D0979 [BEZG]
8367
8442
+
Val
TAC
[ENA]
¡û
>W1810003033
BEZJ01000131
Campylobacterota
Helicobacter cinaedi P18D1268 [BEZJ]
13753
13678
-
Val
TAC
[ENA]
¡û
>W1810003069
BEZK01000124
Campylobacterota
Helicobacter cinaedi P19D1315 [BEZK]
58875
58950
+
Val
TAC
[ENA]
¡û
>W1810003097
BEZL01000088
Campylobacterota
Helicobacter cinaedi P20D1835 [BEZL]
8356
8431
+
Val
TAC
[ENA]
¡û
>W1810003149
BEZM01000200
Campylobacterota
Helicobacter cinaedi CCUG18818 [BEZM]
40460
40385
-
Val
TAC
[ENA]
¡û
>W1810003196
BEZO01000024
Campylobacterota
Helicobacter cinaedi P02D0213 [BEZO]
8355
8430
+
Val
TAC
[ENA]
¡û
>W1810003232
BEZP01000065
Campylobacterota
Helicobacter cinaedi P15D1072 [BEZP]
8356
8431
+
Val
TAC
[ENA]
¡û
>W1810003271
BEZQ01000072
Campylobacterota
Helicobacter cinaedi P16D1106 [BEZQ]
8356
8431
+
Val
TAC
[ENA]
¡û
>W1810003304
BEZR01000009
Campylobacterota
Helicobacter cinaedi P12D0946 [BEZR]
63803
63728
-
Val
TAC
[ENA]
¡û
>W1810003340
BEZS01000009
Campylobacterota
Helicobacter cinaedi P11D1015 [BEZS]
63805
63730
-
Val
TAC
[ENA]
¡û
>W1810010771
BGKF01000101
Campylobacterota
Helicobacter cinaedi PAGU617 [BGKF]
8353
8428
+
Val
TAC
[ENA]
¡û
>W1810010791
BGKG01000050
Campylobacterota
Helicobacter cinaedi PAGU1382 [BGKG]
8375
8450
+
Val
TAC
[ENA]
¡û
>W1511353092
JROY01000006
Campylobacterota
Helicobacter sp. MIT 03-1616 [JROY]
15390
15465
+
Val
TAC
[ENA]
¡û
>W1511353284
JRPD01000001
Campylobacterota
Helicobacter muridarum ST1 [JRPD]
557674
557749
+
Val
TAC
[ENA]
¡û
>W1511353306
JRPD01000004
Campylobacterota
Helicobacter muridarum ST1 [JRPD]
60670
60595
-
Val
TAC
[ENA]
¡û
>W1511353384
JRPF01000006
Campylobacterota
Helicobacter typhlonius MIT 98-6810 [JRPF]
28006
28081
+
Val
TAC
[ENA]
¡û
>W1511353516
JRPJ01000002
Campylobacterota
Helicobacter bilis ATCC 49320 [JRPJ]
713552
713627
+
Val
TAC
[ENA]
¡û
>W1511353594
JRPL01000006
Campylobacterota
Helicobacter trogontum ATCC 700114 [JRPL]
11985
11910
-
Val
TAC
[ENA]
¡û
>W1511353832
JRPR01000002
Campylobacterota
Helicobacter jaachi MIT 09-6949 [JRPR]
71012
70937
-
Val
TAC
[ENA]
¡û
>C161108068
LN907858
Campylobacterota
Helicobacter typhlonius [LN907858]
231498
231423
-
Val
TAC
[Ensembl]
¡û
>C131000533
AP012492
Campylobacterota
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 [AP012492]
214398
214473
+
Val
TAC
[Ensembl]
¡û
>W1610522074
JNOA01000041
Campylobacterota
Helicobacter pullorum [JNOA]
5214
5139
-
Val
TAC
[ENA]
¡û
>W1610522144
JNOC01000035
Campylobacterota
Helicobacter pullorum [JNOC]
133210
133135
-
Val
TAC
[ENA]
¡û
>W1610522230
JNUR01000018
Campylobacterota
Helicobacter pullorum [JNUR]
87767
87692
-
Val
TAC
[ENA]
¡û
>W1611053094
MAJF01000017
Campylobacterota
Helicobacter pullorum [MAJF]
843
768
-
Val
TAC
[ENA]
¡û
>W1611053128
MAJG01000023
Campylobacterota
Helicobacter pullorum [MAJG]
17718
17793
+
Val
TAC
[ENA]
¡û
>W1611055730
MANK01000019
Campylobacterota
Helicobacter pullorum [MANK]
50324
50399
+
Val
TAC
[ENA]
¡û
>W1611055821
MAOZ01000007
Campylobacterota
Helicobacter pullorum [MAOZ]
37821
37896
+
Val
TAC
[ENA]
¡û
>W1611055852
MAPA01000003
Campylobacterota
Helicobacter pullorum [MAPA]
12190
12115
-
Val
TAC
[ENA]
¡û
>W1611055940
MAPC01000017
Campylobacterota
Helicobacter pullorum [MAPC]
51240
51315
+
Val
TAC
[ENA]
¡û
>W1611056006
MAPE01000007
Campylobacterota
Helicobacter pullorum [MAPE]
50639
50714
+
Val
TAC
[ENA]
¡û
>W1710622000
JNOA01000041
Campylobacterota
Helicobacter pullorum [JNOA]
5214
5139
-
Val
TAC
[ENA]
¡û
>W1710622070
JNOC01000035
Campylobacterota
Helicobacter pullorum [JNOC]
133210
133135
-
Val
TAC
[ENA]
¡û
>W1710622156
JNUR01000018
Campylobacterota
Helicobacter pullorum [JNUR]
87767
87692
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK