This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29586 (124 seq.)
>W1710778207
LJCT01000021
Bacillota
Streptococcus parauberis [LJCT]
84384
84470
+
Ser
GGA
[ENA]
¡û
>W1711010515
LQRN01000006
Bacillota
Streptococcus parauberis [LQRN]
78215
78129
-
Ser
GGA
[ENA]
¡û
>W1711024909
LRBI01000009
Bacillota
Streptococcus parauberis [LRBI]
78721
78635
-
Ser
GGA
[ENA]
¡û
>W1711024971
LRBJ01000009
Bacillota
Streptococcus parauberis [LRBJ]
299817
299903
+
Ser
GGA
[ENA]
¡û
>W1711025032
LRBK01000010
Bacillota
Streptococcus parauberis [LRBK]
83051
82965
-
Ser
GGA
[ENA]
¡û
>W1711511638
MLCP01000001
Bacillota
Streptococcus parauberis [MLCP]
530165
530251
+
Ser
GGA
[ENA]
¡û
>W1711944803
NBFB01000001
Bacillota
Streptococcus mutans [NBFB]
89406
89492
+
Ser
GGA
[ENA]
¡û
>W1711944889
NBFD01000002
Bacillota
Streptococcus mutans [NBFD]
137971
137885
-
Ser
GGA
[ENA]
¡û
>W1711944921
NBFE01000001
Bacillota
Streptococcus mutans [NBFE]
138099
138013
-
Ser
GGA
[ENA]
¡û
>W1711944964
NBFF01000018
Bacillota
Streptococcus mutans [NBFF]
26567
26653
+
Ser
GGA
[ENA]
¡û
>W1711945087
NBFJ01000003
Bacillota
Streptococcus mutans [NBFJ]
89398
89484
+
Ser
GGA
[ENA]
¡û
>W1711978786
NDGA01000007
Bacillota
Streptococcus agalactiae [NDGA]
32112
32198
+
Ser
GGA
[ENA]
¡û
>C171037463
CP015283
Bacillota
Streptococcus salivarius ATCC 25975 [CP015283]
147311
147225
-
Ser
GGA
-
¡û
>W131086739
AOBX01000001
Bacillota
Streptococcus mutans 5DC8 [AOBX]
369628
369714
+
Ser
GGA
[ENA]
¡û
>W131086957
AOCB01000004
Bacillota
Streptococcus mutans ATCC 25175 [AOCB]
28479
28565
+
Ser
GGA
[ENA]
¡û
>W131087021
AOCC01000008
Bacillota
Streptococcus mutans NCTC 11060 [AOCC]
28480
28566
+
Ser
GGA
[ENA]
¡û
>W131160668
AQWT01000001
Bacillota
Streptococcus mutans DSM 20523 [AQWT]
439251
439165
-
Ser
GGA
[ENA]
¡û
>W131166267
ARCI01000011
Bacillota
Streptococcus thoraltensis DSM 12221 [ARCI]
5154
5240
+
Ser
GGA
[ENA]
¡û
>W131234714
AUKZ01000012
Bacillota
Streptococcus castoreus DSM 17536 [AUKZ]
16710
16624
-
Ser
GGA
[ENA]
¡û
>W131239334
BANN01000033
Bacillota
Streptococcus parauberis KCTC 11980BP [BANN]
47790
47876
+
Ser
GGA
[ENA]
¡û
>W141006878
AGWE01000015
Bacillota
Streptococcus mutans U2B [AGWE]
6308
6222
-
Ser
GGA
[ENA]
¡û
>W141010103
AHRB01000070
Bacillota
Streptococcus mutans 8ID3 [AHRB]
6273
6187
-
Ser
GGA
[ENA]
¡û
>W141010143
AHRD01000009
Bacillota
Streptococcus mutans SA38 [AHRD]
9648
9734
+
Ser
GGA
[ENA]
¡û
>W141010322
AHRJ01000033
Bacillota
Streptococcus mutans 15JP3 [AHRJ]
9666
9752
+
Ser
GGA
[ENA]
¡û
>W141010345
AHRK01000024
Bacillota
Streptococcus mutans 1SM1 [AHRK]
20269
20355
+
Ser
GGA
[ENA]
¡û
>W141010434
AHRN01000039
Bacillota
Streptococcus mutans 2ST1 [AHRN]
6256
6170
-
Ser
GGA
[ENA]
¡û
>W141010465
AHRO01000065
Bacillota
Streptococcus mutans 11A1 [AHRO]
6257
6171
-
Ser
GGA
[ENA]
¡û
>W141010630
AHRU01000006
Bacillota
Streptococcus mutans 5SM3 [AHRU]
9647
9733
+
Ser
GGA
[ENA]
¡û
>W141010741
AHRY01000003
Bacillota
Streptococcus mutans N29 [AHRY]
42760
42674
-
Ser
GGA
[ENA]
¡û
>W141010825
AHSB01000005
Bacillota
Streptococcus mutans U138 [AHSB]
6279
6193
-
Ser
GGA
[ENA]
¡û
>W141010945
AHSF01000048
Bacillota
Streptococcus mutans N34 [AHSF]
42797
42711
-
Ser
GGA
[ENA]
¡û
>W141011000
AHSH01000014
Bacillota
Streptococcus mutans NLML4 [AHSH]
6257
6171
-
Ser
GGA
[ENA]
¡û
>W141011069
AHSJ01000081
Bacillota
Streptococcus mutans NLML9 [AHSJ]
6258
6172
-
Ser
GGA
[ENA]
¡û
>W141011169
AHSN01000044
Bacillota
Streptococcus mutans NV1996 [AHSN]
6378
6292
-
Ser
GGA
[ENA]
¡û
>W141011250
AHSQ01000017
Bacillota
Streptococcus mutans SF14 [AHSQ]
26369
26455
+
Ser
GGA
[ENA]
¡û
>W141011300
AHSS01000001
Bacillota
Streptococcus mutans ST1 [AHSS]
6381
6295
-
Ser
GGA
[ENA]
¡û
>W141011366
AHSU01000049
Bacillota
Streptococcus mutans U2A [AHSU]
6283
6197
-
Ser
GGA
[ENA]
¡û
>W141011393
AHSV01000051
Bacillota
Streptococcus mutans NLML8 [AHSV]
28491
28577
+
Ser
GGA
[ENA]
¡û
>W141011419
AHSW01000028
Bacillota
Streptococcus mutans NLML1 [AHSW]
27030
27116
+
Ser
GGA
[ENA]
¡û
>W141011482
AHSY01000066
Bacillota
Streptococcus mutans 14D [AHSY]
9640
9726
+
Ser
GGA
[ENA]
¡û
>W141011531
AHTA01000032
Bacillota
Streptococcus mutans 66-2A [AHTA]
6380
6294
-
Ser
GGA
[ENA]
¡û
>W141011585
AHTC01000013
Bacillota
Streptococcus mutans SM4 [AHTC]
9648
9734
+
Ser
GGA
[ENA]
¡û
>W141011649
AHTE01000053
Bacillota
Streptococcus mutans 24 [AHTE]
6260
6174
-
Ser
GGA
[ENA]
¡û
>WENV180232152
OBCO01000148
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
16105
16019
-
Ser
GGA
[ENA]
¢þ
>W141039181
ALWR01000005
Bacillota
Streptococcus parauberis KRS-02109 [ALWR]
77916
77830
-
Ser
GGA
[ENA]
¡û
>W141039855
ALYM01000003
Bacillota
Streptococcus parauberis KRS-02083 [ALYM]
49035
49121
+
Ser
GGA
[ENA]
¡û
>W141040097
ALYQ01000068
Bacillota
Streptococcus mutans B12Sm1 [ALYQ]
67635
67721
+
Ser
GGA
[ENA]
¡û
>W141040139
ALYR01000027
Bacillota
Streptococcus mutans B084SM-A [ALYR]
89270
89356
+
Ser
GGA
[ENA]
¡û
>W141040328
ALYV01000018
Bacillota
Streptococcus mutans B24Sm2 [ALYV]
77376
77462
+
Ser
GGA
[ENA]
¡û
>W141040465
ALYX01000027
Bacillota
Streptococcus mutans B112SM-A [ALYX]
131039
130953
-
Ser
GGA
[ENA]
¡û
>W141040551
ALYZ01000027
Bacillota
Streptococcus mutans B082SM-A [ALYZ]
128769
128683
-
Ser
GGA
[ENA]
¡û
>W141040606
ALZA01000025
Bacillota
Streptococcus mutans B06Sm2 [ALZA]
136884
136798
-
Ser
GGA
[ENA]
¡û
>W141040663
ALZB01000012
Bacillota
Streptococcus mutans B85SM-B [ALZB]
88216
88302
+
Ser
GGA
[ENA]
¡û
>W141040708
ALZB01000027
Bacillota
Streptococcus mutans B85SM-B [ALZB]
88326
88412
+
Ser
GGA
[ENA]
¡û
>W141040790
ALZD01000030
Bacillota
Streptococcus mutans str. B16 P Sm1 [ALZD]
108325
108411
+
Ser
GGA
[ENA]
¡û
>W141040807
ALZD01000038
Bacillota
Streptococcus mutans str. B16 P Sm1 [ALZD]
108400
108486
+
Ser
GGA
[ENA]
¡û
>W141040868
ALZE01000070
Bacillota
Streptococcus mutans B23Sm1 [ALZE]
132299
132213
-
Ser
GGA
[ENA]
¡û
>W141040888
ALZF01000015
Bacillota
Streptococcus mutans B111SM-A [ALZF]
88349
88435
+
Ser
GGA
[ENA]
¡û
>W141040923
ALZF01000030
Bacillota
Streptococcus mutans B111SM-A [ALZF]
88251
88337
+
Ser
GGA
[ENA]
¡û
>WENV180972846
ODUW01000315
[ODUW] human metagenome; G_DNA_Supragingival plaque
21395
21309
-
Ser
GGA
[ENA]
¢þ
>W141234775
BAWT01000010
Bacillota
Streptococcus parauberis [BAWT]
14209
14123
-
Ser
GGA
[ENA]
¡û
>WENV183790445
PPYF01411377
[PPYF] human gut metagenome; stool from patient with Crohn's disease
18588
18502
-
Ser
GGA
[ENA]
¢þ
>C181116981
CP025420
Bacillota
Streptococcus parauberis SPOF3K [CP025420]
1978389
1978303
-
Ser
GGA
-
¡û
>C181207839
LS483349
Bacillota
Streptococcus mutans NCTC10449 [LS483349]
1661600
1661514
-
Ser
GGA
-
¡û
>C181225219
LT906454
Bacillota
Streptococcus acidominimus NCTC11291 [LT906454]
1929806
1929720
-
Ser
GGA
-
¡û
>W1910617147
LHAE01000009
Bacillota
Streptococcus parauberis FSL S3-0563 [LHAE]
15312
15226
-
Ser
GGA
[ENA]
¡û
>W1910637588
LQRM01000011
Bacillota
Streptococcus parauberis SP204-42-2 [LQRM]
29400
29314
-
Ser
GGA
[ENA]
¡û
>W1910637640
LQRO01000053
Bacillota
Streptococcus parauberis Fin349 [LQRO]
49179
49265
+
Ser
GGA
[ENA]
¡û
>W1910637920
LRBL01000029
Bacillota
Streptococcus parauberis FSL W6-0838 [LRBL]
14052
13966
-
Ser
GGA
[ENA]
¡û
>W1910638266
LRDN01000017
Bacillota
Streptococcus parauberis FSL R5-303 [LRDN]
49044
49130
+
Ser
GGA
[ENA]
¡û
>W1910638379
LRFJ01000026
Bacillota
Streptococcus parauberis FSL R5-0305 [LRFJ]
78420
78334
-
Ser
GGA
[ENA]
¡û
>C09109777
AP010655
Bacillota
Streptococcus mutans NN2025 [AP010655]
1631682
1631596
-
Ser
GGA
[Ensembl]
¡û
>W1911243631
NSGR01000005
Bacillota
Streptococcus parauberis SP158-29 [NSGR]
173183
173269
+
Ser
GGA
[ENA]
¡û
>W1911243692
NSGS01000009
Bacillota
Streptococcus parauberis AZ70.1 [NSGS]
41851
41937
+
Ser
GGA
[ENA]
¡û
>W1810821097
QSFF01000001
Bacillota
Streptococcus mutans AM44-1 [QSFF]
462711
462625
-
Ser
GGA
[ENA]
¡û
>C151016010
CP007016
Bacillota
Streptococcus mutans UA159-FR [CP007016]
390053
390139
+
Ser
GGA
[Ensembl]
¡û
>W1511354725
JRQN01000006
Bacillota
Streptococcus uberis CAIM 1894 [JRQN]
90443
90357
-
Ser
GGA
[ENA]
¡û
>C11121048
CP002471
Bacillota
Streptococcus parauberis KCTC 11537 [CP002471]
251114
251200
+
Ser
GGA
[Ensembl]
¡û
>W1511477669
JWGO01000035
Bacillota
Streptococcus mutans 1006_SMUT [JWGO]
91947
92033
+
Ser
GGA
[ENA]
¡û
>W1511477776
JWGS01000018
Bacillota
Streptococcus mutans 1002_SMUT [JWGS]
132233
132147
-
Ser
GGA
[ENA]
¡û
>W11149483
AEUT02000001
Bacillota
Streptococcus parauberis NCFD 2020 [AEUT]
1169067
1168981
-
Ser
GGA
[ENA]
¡û
>W1511644746
LDYC01000006
Bacillota
Streptococcus dysgalactiae subsp. equisimilis WCHSDSE-1 [LDYC]
125
39
-
Ser
GGA
[ENA]
¡û
>W11181503
AGKE01000029
Bacillota
Streptococcus mutans TCI-146 [AGKE]
29239
29325
+
Ser
GGA
[ENA]
¡û
>W11181645
AGKI01000028
Bacillota
Streptococcus mutans TCI-110 [AGKI]
30671
30757
+
Ser
GGA
[ENA]
¡û
>W11181681
AGKJ01000012
Bacillota
Streptococcus mutans TCI-116 [AGKJ]
16722
16808
+
Ser
GGA
[ENA]
¡û
>W11181857
AGKO01000033
Bacillota
Streptococcus mutans TCI-143 [AGKO]
29265
29351
+
Ser
GGA
[ENA]
¡û
>W11181963
AGKR01000025
Bacillota
Streptococcus mutans TCI-149 [AGKR]
29287
29373
+
Ser
GGA
[ENA]
¡û
>W11182108
AGKV01000024
Bacillota
Streptococcus mutans TCI-154 [AGKV]
29218
29304
+
Ser
GGA
[ENA]
¡û
>W11182178
AGKX01000019
Bacillota
Streptococcus mutans TCI-163 [AGKX]
66317
66403
+
Ser
GGA
[ENA]
¡û
>W11182290
AGLA01000018
Bacillota
Streptococcus mutans TCI-170 [AGLA]
66909
66995
+
Ser
GGA
[ENA]
¡û
>W11182402
AGLD01000024
Bacillota
Streptococcus mutans TCI-177 [AGLD]
30421
30507
+
Ser
GGA
[ENA]
¡û
>W11182472
AGLF01000028
Bacillota
Streptococcus mutans TCI-187 [AGLF]
29238
29324
+
Ser
GGA
[ENA]
¡û
>W11182653
AGLK01000031
Bacillota
Streptococcus mutans TCI-204 [AGLK]
16716
16802
+
Ser
GGA
[ENA]
¡û
>W11182834
AGLP01000038
Bacillota
Streptococcus mutans TCI-220 [AGLP]
16720
16806
+
Ser
GGA
[ENA]
¡û
>W11183016
AGLU01000020
Bacillota
Streptococcus mutans TCI-228 [AGLU]
30669
30755
+
Ser
GGA
[ENA]
¡û
>W11183203
AGLZ01000025
Bacillota
Streptococcus mutans TCI-244 [AGLZ]
30672
30758
+
Ser
GGA
[ENA]
¡û
>W11183276
AGMB01000027
Bacillota
Streptococcus mutans TCI-256 [AGMB]
87711
87797
+
Ser
GGA
[ENA]
¡û
>W11183457
AGMG01000022
Bacillota
Streptococcus mutans TCI-278 [AGMG]
30776
30862
+
Ser
GGA
[ENA]
¡û
>W11183493
AGMH01000028
Bacillota
Streptococcus mutans TCI-279 [AGMH]
16717
16803
+
Ser
GGA
[ENA]
¡û
>W11183528
AGMI01000027
Bacillota
Streptococcus mutans TCI-280 [AGMI]
29237
29323
+
Ser
GGA
[ENA]
¡û
>W11183708
AGMN01000028
Bacillota
Streptococcus mutans TCI-30 [AGMN]
16718
16804
+
Ser
GGA
[ENA]
¡û
>W11183779
AGMP01000019
Bacillota
Streptococcus mutans TCI-400 [AGMP]
20607
20693
+
Ser
GGA
[ENA]
¡û
>W11183851
AGMR01000029
Bacillota
Streptococcus mutans TCI-62 [AGMR]
16717
16803
+
Ser
GGA
[ENA]
¡û
>W11184033
AGMW01000007
Bacillota
Streptococcus mutans TCI-85 [AGMW]
34949
35035
+
Ser
GGA
[ENA]
¡û
>W11184102
AGMY01000008
Bacillota
Streptococcus mutans TCI-92 [AGMY]
87841
87927
+
Ser
GGA
[ENA]
¡û
>W11184175
AGNA01000027
Bacillota
Streptococcus mutans TCI-99 [AGNA]
30674
30760
+
Ser
GGA
[ENA]
¡û
>W121115056
ALQM01000010
Bacillota
Streptococcus agalactiae CCUG 25532 [ALQM]
32383
32469
+
Ser
GGA
[ENA]
¡û
>W1610518142
JATZ01000018
Bacillota
Streptococcus equi subsp. zooepidemicus Sz105 [JATZ]
16056
16142
+
Ser
GGA
[ENA]
¡û
>W1610518250
JAUC01000019
Bacillota
Streptococcus equi subsp. zooepidemicus Sz5 [JAUC]
39015
39101
+
Ser
GGA
[ENA]
¡û
>W1610518277
JAUD01000014
Bacillota
Streptococcus equi subsp. zooepidemicus Sz12is [JAUD]
26007
26093
+
Ser
GGA
[ENA]
¡û
>W1610618063
LHAC01000014
Bacillota
Streptococcus parauberis [LHAC]
65528
65614
+
Ser
GGA
[ENA]
¡û
>W1610618094
LHAD01000009
Bacillota
Streptococcus parauberis [LHAD]
78676
78590
-
Ser
GGA
[ENA]
¡û
>W1610638460
LIXR01000007
Bacillota
Streptococcus parauberis [LIXR]
78196
78110
-
Ser
GGA
[ENA]
¡û
>W1610642426
LJCT01000021
Bacillota
Streptococcus parauberis [LJCT]
84384
84470
+
Ser
GGA
[ENA]
¡û
>W1610873021
LRBI01000009
Bacillota
Streptococcus parauberis [LRBI]
78721
78635
-
Ser
GGA
[ENA]
¡û
>W1610873083
LRBJ01000009
Bacillota
Streptococcus parauberis [LRBJ]
299817
299903
+
Ser
GGA
[ENA]
¡û
>W1610873144
LRBK01000010
Bacillota
Streptococcus parauberis [LRBK]
83051
82965
-
Ser
GGA
[ENA]
¡û
>W1611058676
MATW01000025
Bacillota
Streptococcus dysgalactiae subsp. equisimilis [MATW]
24406
24320
-
Ser
GGA
[ENA]
¡û
>W1710613662
JATZ01000018
Bacillota
Streptococcus equi subsp. zooepidemicus Sz105 [JATZ]
16056
16142
+
Ser
GGA
[ENA]
¡û
>W1710613770
JAUC01000019
Bacillota
Streptococcus equi subsp. zooepidemicus Sz5 [JAUC]
39015
39101
+
Ser
GGA
[ENA]
¡û
>W1710613797
JAUD01000014
Bacillota
Streptococcus equi subsp. zooepidemicus Sz12is [JAUD]
26007
26093
+
Ser
GGA
[ENA]
¡û
>W1710744238
LHAC01000014
Bacillota
Streptococcus parauberis [LHAC]
65528
65614
+
Ser
GGA
[ENA]
¡û
>W1710744269
LHAD01000009
Bacillota
Streptococcus parauberis [LHAD]
78676
78590
-
Ser
GGA
[ENA]
¡û
>W1710774291
LIXR01000007
Bacillota
Streptococcus parauberis [LIXR]
78196
78110
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK