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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29590 (68 seq.)
>W1711129168
LUTU01000004
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
97558
97647
+
Ser
CGA
[ENA]
¡û
>W1711143215
LVHE01000015
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
115447
115536
+
Ser
CGA
[ENA]
¡û
>C171033063
CP014689
Alphaproteobacteria
Gluconobacter albidus TMW2.1191 [CP014689]
1718864
1718775
-
Ser
CGA
-
¡û
>W131240806
BAON01000014
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3255 [BAON]
72312
72401
+
Ser
CGA
[ENA]
¡û
>W131241375
BARL01000001
Alphaproteobacteria
Gluconobacter frateurii NBRC 103465 [BARL]
1032473
1032384
-
Ser
CGA
[ENA]
¡û
>C010085
CP000009
Alphaproteobacteria
Gluconobacter oxydans 621H [CP000009]
155206
155117
-
Ser
CGA
[Ensembl]
¡û
>W141195268
AYTY01000147
Alphaproteobacteria
Gluconobacter oxydans DSM 2003 [AYTY]
42949
43038
+
Ser
CGA
[ENA]
¡û
>W141229914
BASM01000001
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3257 [BASM]
190528
190439
-
Ser
CGA
[ENA]
¡û
>WENV170440079
CEUV01068195
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
86
175
+
Ser
CGA
[ENA]
¢þ
>WENV170902562
MDTD01187296
[MDTD] marine metagenome; seawater
128865
128776
-
Ser
CGA
[ENA]
¢þ
>C181221233
LT900338
Alphaproteobacteria
Gluconobacter oxydans 621H [LT900338]
155206
155117
-
Ser
CGA
-
¡û
>W1910181387
BJLY01000002
Alphaproteobacteria
Gluconobacter roseus NBRC 3990 [BJLY]
631999
631910
-
Ser
CGA
[ENA]
¡û
>W1910181887
BJMK01000031
Alphaproteobacteria
Gluconobacter sphaericus NBRC 12467 [BJMK]
405
316
-
Ser
CGA
[ENA]
¡û
>W1910183176
BJNM01000010
Alphaproteobacteria
Gluconobacter oxydans NBRC 14819 [BJNM]
66810
66899
+
Ser
CGA
[ENA]
¡û
>W1810000631
BEWL01000028
Alphaproteobacteria
Gluconobacter albidus NBRC 3250 [BEWL]
6342
6431
+
Ser
CGA
[ENA]
¡û
>W1810000659
BEWM01000003
Alphaproteobacteria
Gluconobacter cerinus NBRC 3267 [BEWM]
106375
106464
+
Ser
CGA
[ENA]
¡û
>W1810000711
BEWN01000004
Alphaproteobacteria
Gluconobacter frateurii NBRC 3264 [BEWN]
75416
75505
+
Ser
CGA
[ENA]
¡û
>W1810000735
BEWO01000002
Alphaproteobacteria
Gluconobacter japonicus NBRC 3271 [BEWO]
170071
169982
-
Ser
CGA
[ENA]
¡û
>W1810000800
BEWP01000005
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BEWP]
183398
183309
-
Ser
CGA
[ENA]
¡û
>C151006223
CP004373
Alphaproteobacteria
Gluconobacter oxydans DSM 3504 [CP004373]
181532
181443
-
Ser
CGA
[Ensembl]
¡û
>W1511620455
LCTG01000004
Alphaproteobacteria
Gluconobacter oxydans NL71 [LCTG]
394492
394581
+
Ser
CGA
[ENA]
¡û
>C161096024
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
3138765
3138676
-
Ser
CGA
-
¡û
>W121016320
AGQV01000002
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
361539
361450
-
Ser
CGA
[ENA]
¡û
>W121034279
AHKI01000069
Alphaproteobacteria
Gluconobacter thailandicus WSH-003 [AHKI]
26680
26591
-
Ser
CGA
[ENA]
¡û
>W121123429
BADZ01000011
Alphaproteobacteria
Gluconobacter frateurii NBRC 101659 [BADZ]
23844
23755
-
Ser
CGA
[ENA]
¡û
>W1610041197
BANG01000043
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
1701
1612
-
Ser
CGA
[ENA]
¡û
>W1610041235
BANH01000061
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
25009
24920
-
Ser
CGA
[ENA]
¡û
>W1610076861
BCZB01000020
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
3191
3280
+
Ser
CGA
[ENA]
¡û
>C131009956
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
2345494
2345583
+
Ser
CGA
[Ensembl]
¡û
>W1610623997
LHZB01000105
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
23689
23600
-
Ser
CGA
[ENA]
¡û
>W1610624122
LHZD01000013
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
50076
49987
-
Ser
CGA
[ENA]
¡û
>W1610624191
LHZE01000086
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
66830
66919
+
Ser
CGA
[ENA]
¡û
>W1610624276
LHZG01000170
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
863
774
-
Ser
CGA
[ENA]
¡û
>W1610624294
LHZH01000075
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
12694
12605
-
Ser
CGA
[ENA]
¡û
>W1610624366
LHZI01001606
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
3609
3698
+
Ser
CGA
[ENA]
¡û
>W1610624408
LHZJ01000080
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
71512
71423
-
Ser
CGA
[ENA]
¡û
>W1610624464
LHZK01000128
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
70240
70329
+
Ser
CGA
[ENA]
¡û
>W1610624509
LHZL01000168
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
11779
11868
+
Ser
CGA
[ENA]
¡û
>W1610624532
LHZM01000079
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
67014
67103
+
Ser
CGA
[ENA]
¡û
>W1610624566
LHZN01000069
Alphaproteobacteria
Gluconobacter albidus [LHZN]
400
311
-
Ser
CGA
[ENA]
¡û
>W1610624650
LHZO01000064
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
272859
272770
-
Ser
CGA
[ENA]
¡û
>W1610624680
LHZP01000028
Alphaproteobacteria
Gluconobacter roseus [LHZP]
101460
101549
+
Ser
CGA
[ENA]
¡û
>W1610624778
LHZR01000112
Alphaproteobacteria
Gluconobacter albidus [LHZR]
181303
181214
-
Ser
CGA
[ENA]
¡û
>W1610624814
LHZS01000097
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
32878
32789
-
Ser
CGA
[ENA]
¡û
>W1610624988
LHZW01000052
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
61079
61168
+
Ser
CGA
[ENA]
¡û
>W1610940241
LUTU01000004
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
97558
97647
+
Ser
CGA
[ENA]
¡û
>W1610954223
LVHE01000015
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
115447
115536
+
Ser
CGA
[ENA]
¡û
>W1710038395
BANG01000043
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
1701
1612
-
Ser
CGA
[ENA]
¡û
>W1710038433
BANH01000061
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
25009
24920
-
Ser
CGA
[ENA]
¡û
>W1710074550
BCZB01000020
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
3191
3280
+
Ser
CGA
[ENA]
¡û
>W1710624737
JOPF01000011
Alphaproteobacteria
Gluconobacter sp. DsW_056 [JOPF]
95870
95959
+
Ser
CGA
[ENA]
¡û
>W1710624807
JOPH01000006
Alphaproteobacteria
Gluconobacter sp. DsW_058 [JOPH]
5311
5222
-
Ser
CGA
[ENA]
¡û
>W1710755115
LHZB01000105
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
23689
23600
-
Ser
CGA
[ENA]
¡û
>W1710755240
LHZD01000013
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
50076
49987
-
Ser
CGA
[ENA]
¡û
>W1710755309
LHZE01000086
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
66830
66919
+
Ser
CGA
[ENA]
¡û
>W1710755394
LHZG01000170
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
863
774
-
Ser
CGA
[ENA]
¡û
>W1710755412
LHZH01000075
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
12694
12605
-
Ser
CGA
[ENA]
¡û
>W1710755484
LHZI01001606
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
3609
3698
+
Ser
CGA
[ENA]
¡û
>W1710755526
LHZJ01000080
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
71512
71423
-
Ser
CGA
[ENA]
¡û
>W1710755582
LHZK01000128
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
70240
70329
+
Ser
CGA
[ENA]
¡û
>W1710755627
LHZL01000168
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
11779
11868
+
Ser
CGA
[ENA]
¡û
>W1710755650
LHZM01000079
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
67014
67103
+
Ser
CGA
[ENA]
¡û
>W1710755684
LHZN01000069
Alphaproteobacteria
Gluconobacter albidus [LHZN]
400
311
-
Ser
CGA
[ENA]
¡û
>W1710755768
LHZO01000064
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
272859
272770
-
Ser
CGA
[ENA]
¡û
>W1710755798
LHZP01000028
Alphaproteobacteria
Gluconobacter roseus [LHZP]
101460
101549
+
Ser
CGA
[ENA]
¡û
>W1710755896
LHZR01000112
Alphaproteobacteria
Gluconobacter albidus [LHZR]
181303
181214
-
Ser
CGA
[ENA]
¡û
>W1710755932
LHZS01000097
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
32878
32789
-
Ser
CGA
[ENA]
¡û
>W1710756106
LHZW01000052
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
61079
61168
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK