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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.295918 (31 seq.)
>W131241486
BARX01000010
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
93268
93344
+
Val
GAC
[ENA]
¡û
>C022687
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
2350595
2350671
+
Val
GAC
[Ensembl]
¡û
>C022688
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
2350692
2350768
+
Val
GAC
[Ensembl]
¡û
>WENV180293519
OBIY01000034
[OBIY] beach sand metagenome; beach sand
48164
48088
-
Val
GAC
[ENA]
¢þ
>W141152675
AXBZ01000022
Gammaproteobacteria
Alcanivorax sp. P2S70 [AXBZ]
10689
10765
+
Val
GAC
[ENA]
¡û
>W141277056
JAEH01000021
Gammaproteobacteria
Shewanella waksmanii ATCC BAA-643 [JAEH]
30957
30881
-
Val
GAC
[ENA]
¡û
>WENV019774
AACY020538704
Marine microbial communities from Global Ocean Sampling (GOS)
236
314
+
Val
GAC
[ENA]
>WENV170024167
BCQL01026533
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
764
688
-
Val
GAC
[ENA]
¢þ
>WENV170266632
CERE01095808
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2914
2838
-
Val
GAC
[ENA]
¢þ
>WENV170422419
CEUN01159427
[CEUN] marine metagenome genome assembly TARA_124_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4164
4088
-
Val
GAC
[ENA]
¢þ
>WENV170427192
CEUQ01154616
[CEUQ] marine metagenome genome assembly TARA_124_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
336
260
-
Val
GAC
[ENA]
¢þ
>W09104459
AALS01000008
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
5813
5889
+
Val
GAC
[ENA]
¡û
>W09104460
AALS01000008
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
5910
5986
+
Val
GAC
[ENA]
¡û
>C181061360
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
2098702
2098626
-
Val
GAC
-
¡û
>C181061361
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
2098605
2098529
-
Val
GAC
-
¡û
>C191148739
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
4618638
4618562
-
Val
GAC
-
¡û
>C191187246
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
2062706
2062630
-
Val
GAC
-
¡û
>C191187247
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
2062609
2062533
-
Val
GAC
-
¡û
>W1910001333
AQOQ01000007
Gammaproteobacteria
Alcanivorax sp. MD8A [AQOQ]
106302
106226
-
Val
GAC
[ENA]
¡û
>W1910270371
FQLF01000002
Gammaproteobacteria
Oceanicoccus sp. KOV_DT_Chl [FQLF]
44392
44316
-
Val
GAC
[ENA]
¡û
>W1911218987
NRRB01000004
Gammaproteobacteria
Paraferrimonas haliotis AFRC7-2-1 [NRRB]
278737
278813
+
Val
GAC
[ENA]
¡û
>W1911219072
NRRC01000013
Gammaproteobacteria
Paraferrimonas haliotis CFD7-4-2 [NRRC]
20191
20267
+
Val
GAC
[ENA]
¡û
>W1911809140
QYYA01000003
Gammaproteobacteria
Alcanivorax profundi MTEO17 [QYYA]
317810
317886
+
Val
GAC
[ENA]
¡û
>W1911811057
QZCH01000040
Gammaproteobacteria
Motilimonas pumila PLHSC7-2 [QZCH]
26594
26670
+
Val
GAC
[ENA]
¡û
>W1911812366
QZEI01000113
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
974
898
-
Val
GAC
[ENA]
¡û
>W1511302179
JPII01000048
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
2847
2771
-
Val
GAC
[ENA]
¡û
>W1511302180
JPII01000048
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
2750
2674
-
Val
GAC
[ENA]
¡û
>W1511366767
JSFF01000003
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
220618
220542
-
Val
GAC
[ENA]
¡û
>W1511366768
JSFF01000003
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
220521
220445
-
Val
GAC
[ENA]
¡û
>W1610019394
ARXV01000002
Gammaproteobacteria
Alcanivorax nanhaiticus [ARXV]
45418
45342
-
Val
GAC
[ENA]
¡û
>W1710016288
ARXV01000002
Gammaproteobacteria
Alcanivorax nanhaiticus [ARXV]
45418
45342
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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