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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29611 (29 seq.)
>W131182169
ARQE01000001
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
105152
105241
+
Ser
CGA
[ENA]
¡û
>W1711350367
MCRJ01000001
Alphaproteobacteria
Methylobrevis pamukkalensis [MCRJ]
71504
71415
-
Ser
CGA
[ENA]
¡û
>W131214236
ATTQ01000016
Alphaproteobacteria
Rhizobium mongolense USDA 1844 [ATTQ]
83574
83485
-
Ser
CGA
[ENA]
¡û
>W131220079
ATZB01000058
Alphaproteobacteria
Rhizobium sullae WSM1592 [ATZB]
14573
14662
+
Ser
CGA
[ENA]
¡û
>C171057091
CP017101
Alphaproteobacteria
Rhizobium gallicum IE4872 [CP017101]
4201124
4201035
-
Ser
CGA
-
¡û
>C171059074
CP017241
Alphaproteobacteria
Rhizobium etli 8C-3 [CP017241]
4097676
4097587
-
Ser
CGA
-
¡û
>WENV170552292
CXWJ01053365
[CXWJ] wastewater metagenome; activated sludge
2021
2110
+
Ser
CGA
[ENA]
¢þ
>WENV170954673
MJUI01020123
[MJUI] soil metagenome; viral particles from soil sample MG3
101
190
+
Ser
CGA
[ENA]
¢þ
>C181179971
CP029550
Alphaproteobacteria
Methylobacterium durans 17SD2-17 [CP029550]
974770
974859
+
Ser
CGA
-
¡û
>C181227382
LT960614
Alphaproteobacteria
Hartmannibacter diazotrophicus type strain: E19 [LT960614]
4379744
4379655
-
Ser
CGA
-
¡û
>C191184161
CP040914
Alphaproteobacteria
Mesorhizobium sp. 8 [CP040914]
2654450
2654361
-
Ser
CGA
-
¡û
>W1910441856
FWER01000080
Alphaproteobacteria
Rhizobium sullae [FWER]
18950
19039
+
Ser
CGA
[ENA]
¡û
>W1810147410
PIQN01000032
Alphaproteobacteria
Rhizobium sullae HCNT1 [PIQN]
119115
119026
-
Ser
CGA
[ENA]
¡û
>W1810608992
QGTR01000005
Alphaproteobacteria
Hoeflea marina DSM 16791 [QGTR]
345760
345849
+
Ser
CGA
[ENA]
¡û
>C151013867
CP006877
Alphaproteobacteria
Rhizobium gallicum bv. gallicum R602sp [CP006877]
4057349
4057260
-
Ser
CGA
[Ensembl]
¡û
>C161003849
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
346615
346704
+
Ser
CGA
[Ensembl]
¡û
>W1610056531
BBWI01000025
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
155330
155241
-
Ser
CGA
[ENA]
¡û
>W1610056663
BBWL01000033
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
72520
72609
+
Ser
CGA
[ENA]
¡û
>W1610056901
BBWQ01000011
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
443048
442959
-
Ser
CGA
[ENA]
¡û
>W1610056942
BBWR01000005
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
102066
102155
+
Ser
CGA
[ENA]
¡û
>W1610057036
BBWT01000008
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
384276
384187
-
Ser
CGA
[ENA]
¡û
>W1710053230
BBWI01000025
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
155330
155241
-
Ser
CGA
[ENA]
¡û
>W1710053362
BBWL01000033
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
72520
72609
+
Ser
CGA
[ENA]
¡û
>W1710053600
BBWQ01000011
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
443048
442959
-
Ser
CGA
[ENA]
¡û
>W1710053641
BBWR01000005
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
102066
102155
+
Ser
CGA
[ENA]
¡û
>W1710053735
BBWT01000008
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
384276
384187
-
Ser
CGA
[ENA]
¡û
>W1710505172
FMTM01000006
Alphaproteobacteria
Rhizobium mongolense loessense [FMTM]
138541
138630
+
Ser
CGA
[ENA]
¡û
>W1710588125
FQZC01000002
Alphaproteobacteria
Aureimonas altamirensis DSM 21988 [FQZC]
258461
258550
+
Ser
CGA
[ENA]
¡û
>W1710619444
JHUO01000236
Alphaproteobacteria
Rhizobium yanglingense [JHUO]
139089
139178
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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