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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.296174 (59 seq.)
>W1710879804
LMRX01000023
Actinomycetota
Mycobacterium sp. Soil538 [LMRX]
157927
158000
+
Lys
TTT
[ENA]
¡û
>W1710881438
LMTB01000076
Actinomycetota
Dietzia timorensis [LMTB]
10485
10560
+
Lys
TTT
[ENA]
¡û
>W1711007221
LQOZ01000020
Actinomycetota
Mycolicibacter hiberniae [LQOZ]
108693
108618
-
Lys
TTT
[ENA]
¡û
>W1711007572
LQPG01000020
Actinomycetota
Mycolicibacter longobardus longobardum [LQPG]
47603
47528
-
Lys
TTT
[ENA]
¡û
>W1711007647
LQPI01000033
Actinomycetota
Mycolicibacter nonchromogenicus nonchromogenicum [LQPI]
74233
74308
+
Lys
TTT
[ENA]
¡û
>W1711008146
LQPS01000051
Actinomycetota
Mycolicibacter senuensis senuense [LQPS]
78461
78386
-
Lys
TTT
[ENA]
¡û
>W1711008339
LQPX01000002
Actinomycetota
Mycolicibacter terrae [LQPX]
82611
82536
-
Lys
TTT
[ENA]
¡û
>W1711081616
LSSV01000001
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
275340
275265
-
Lys
TTT
[ENA]
¡û
>W1711173231
LWCS01000001
Actinomycetota
Mycolicibacterium iranicum [LWCS]
74300
74375
+
Lys
TTT
[ENA]
¡û
>W1711276924
LZIN01000054
Actinomycetota
Mycolicibacter sinensis sinense [LZIN]
1395
1470
+
Lys
TTT
[ENA]
¡û
>W1711278834
LZKB01000137
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZKB]
48552
48477
-
Lys
TTT
[ENA]
¡û
>W1711281425
LZME01000060
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZME]
1249
1324
+
Lys
TTT
[ENA]
¡û
>W1711325428
MBEL01000022
Actinomycetota
Mycolicibacter heraklionensis heraklionense [MBEL]
31449
31374
-
Lys
TTT
[ENA]
¡û
>W131229926
AUHE01000007
Actinomycetota
Gordonia shandongensis DSM 45094 [AUHE]
2951
2878
-
Lys
TTT
[ENA]
¡û
>W1711772332
MVHH01000087
Actinomycetota
Mycolicibacter arupensis arupense [MVHH]
3179
3254
+
Lys
TTT
[ENA]
¡û
>W1711772650
MVHO01000007
Actinomycetota
Mycolicibacterium chubuense [MVHO]
51092
51019
-
Lys
TTT
[ENA]
¡û
>W1711773187
MVHZ01000027
Actinomycetota
Mycolicibacter minnesotensis minnesotense [MVHZ]
29189
29264
+
Lys
TTT
[ENA]
¡û
>C171044575
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
862750
862675
-
Lys
TTT
-
¡û
>W131099087
AOSR01000008
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
9476
9551
+
Lys
TTT
[ENA]
¡û
>W141089978
AUWR01000011
Actinomycetota
Mycobacterium sp. UM_WGJ [AUWR]
149549
149474
-
Lys
TTT
[ENA]
¡û
>W141090108
AUWT01000055
Actinomycetota
Mycolicibacterium iranicum UM_TJL [AUWT]
24487
24562
+
Lys
TTT
[ENA]
¡û
>WENV181169796
OEIV010010329
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
315
240
-
Lys
TTT
[ENA]
¢þ
>W141233321
BAVQ01000022
Actinomycetota
Tomitella biformata AHU 1821 [BAVQ]
116673
116748
+
Lys
TTT
[ENA]
¡û
>WENV170578066
FSSH01009359
[FSSH] freshwater metagenome; drinking water
347
272
-
Lys
TTT
[ENA]
¢þ
>C181017421
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
845864
845789
-
Lys
TTT
-
¡û
>C181107073
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
826605
826530
-
Lys
TTT
-
¡û
>C181148339
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
2094851
2094776
-
Lys
TTT
-
¡û
>C181226048
LT906469
Actinomycetota
Mycolicibacter terrae NCTC10856 [LT906469]
779477
779403
-
Lys
TTT
-
¡û
>W1911279025
NTGA01000031
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
9259
9334
+
Lys
TTT
[ENA]
¡û
>W1911422531
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
1539868
1539943
+
Lys
TTT
[ENA]
¡û
>W1810326063
PUEV01000106
Actinomycetota
Mycolicibacter virginiensis GF75 [PUEV]
1850
1775
-
Lys
TTT
[ENA]
¡û
>W1810580876
QETM01000046
Actinomycetota
Dietzia maris AMT [QETM]
18849
18774
-
Lys
TTT
[ENA]
¡û
>W1810721985
QNTT01000004
Actinomycetota
Dietzia maris SST1 [QNTT]
116748
116673
-
Lys
TTT
[ENA]
¡û
>W1510651813
CVTC01000890
Actinomycetota
Mycolicibacter nonchromogenicus NCK 8460 [CVTC]
190
265
+
Lys
TTT
[ENA]
¡û
>W1511350523
JRMK01000024
Actinomycetota
Mycobacterium sp. UM_Kg1 [JRMK]
33967
33892
-
Lys
TTT
[ENA]
¡û
>W1511350612
JRMM01000020
Actinomycetota
Mycobacterium sp. UM_Kg27 [JRMM]
597
672
+
Lys
TTT
[ENA]
¡û
>W1511350645
JRMN01000002
Actinomycetota
Mycobacterium sp. UM_NZ2 [JRMN]
16803
16878
+
Lys
TTT
[ENA]
¡û
>W1511352210
JROA01000001
Actinomycetota
Mycolicibacterium rufum JS14 [JROA]
4868175
4868248
+
Lys
TTT
[ENA]
¡û
>W11139536
AEKG01000321
Actinomycetota
Dietzia cinnamea P4 [AEKG]
12830
12755
-
Lys
TTT
[ENA]
¡û
>W1511534426
JYNX01000066
Actinomycetota
Mycolicibacterium chubuense DSM 44219 [JYNX]
36093
36166
+
Lys
TTT
[ENA]
¡û
>W1511582419
LASW02000069
Actinomycetota
Mycolicibacter arupensis GUC1 [LASW]
4163
4088
-
Lys
TTT
[ENA]
¡û
>W1511639825
LDPO01000001
Actinomycetota
Mycolicibacter heraklionensis Davo [LDPO]
590521
590596
+
Lys
TTT
[ENA]
¡û
>W11178790
AGFF01000033
Actinomycetota
Dietzia alimentaria 72 [AGFF]
14719
14792
+
Lys
TTT
[ENA]
¡û
>C121004704
CP003053
Actinomycetota
Mycolicibacterium chubuense NBB4 [CP003053]
4686148
4686223
+
Lys
TTT
[Ensembl]
¡û
>W1610050630
BBGB01000012
Actinomycetota
Mycolicibacterium chlorophenolicum JCM 7439 = NBRC 15527 [BBGB]
13224
13297
+
Lys
TTT
[ENA]
¡û
>W1610051307
BBGS01002035
Actinomycetota
Mycolicibacterium rufum JCM 16372 [BBGS]
167
94
-
Lys
TTT
[ENA]
¡û
>W1610067952
BCQY01000006
Actinomycetota
Mycolicibacterium chlorophenolicum JCM 7439 = NBRC 15527 [BCQY]
58990
59063
+
Lys
TTT
[ENA]
¡û
>W1610074571
BCWU01000005
Actinomycetota
Gordonia hydrophobica NBRC 16057 [BCWU]
24136
24209
+
Lys
TTT
[ENA]
¡û
>W1610742150
LMRX01000023
Actinomycetota
Mycobacterium sp. Soil538 [LMRX]
157927
158000
+
Lys
TTT
[ENA]
¡û
>W1610743784
LMTB01000076
Actinomycetota
Dietzia timorensis [LMTB]
10485
10560
+
Lys
TTT
[ENA]
¡û
>W1610920451
LSSV01000001
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
275340
275265
-
Lys
TTT
[ENA]
¡û
>W1610981836
LWCS01000001
Actinomycetota
Mycolicibacterium iranicum [LWCS]
74300
74375
+
Lys
TTT
[ENA]
¡û
>W1611036209
LZIN01000054
Actinomycetota
Mycolicibacter sinensis sinense [LZIN]
1395
1470
+
Lys
TTT
[ENA]
¡û
>W1611038119
LZKB01000137
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZKB]
48552
48477
-
Lys
TTT
[ENA]
¡û
>W1611040710
LZME01000060
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZME]
1249
1324
+
Lys
TTT
[ENA]
¡û
>W1710047029
BBGB01000012
Actinomycetota
Mycolicibacterium chlorophenolicum JCM 7439 = NBRC 15527 [BBGB]
13224
13297
+
Lys
TTT
[ENA]
¡û
>W1710047706
BBGS01002035
Actinomycetota
Mycolicibacterium rufum JCM 16372 [BBGS]
167
94
-
Lys
TTT
[ENA]
¡û
>W1710065325
BCQY01000006
Actinomycetota
Mycolicibacterium chlorophenolicum JCM 7439 = NBRC 15527 [BCQY]
58990
59063
+
Lys
TTT
[ENA]
¡û
>W1710071689
BCWU01000005
Actinomycetota
Gordonia hydrophobica NBRC 16057 [BCWU]
24136
24209
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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