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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29627 (59 seq.)
>W1710862293
LMEG01000044
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
101090
101179
+
Ser
GGA
[ENA]
¡û
>W1710878684
LMRD01000010
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
3236
3147
-
Ser
GGA
[ENA]
¡û
>W1711116166
LUAV01000002
Alphaproteobacteria
Ensifer aridi [LUAV]
116552
116641
+
Ser
GGA
[ENA]
¡û
>W1711765486
MUXO01000037
Alphaproteobacteria
Pseudorhizobium flavum [MUXO]
423595
423506
-
Ser
GGA
[ENA]
¡û
>W1711827030
MXQE01000006
Alphaproteobacteria
Labrenzia sp. CP4 [MXQE]
362658
362747
+
Ser
GGA
[ENA]
¡û
>C171020975
CP013107
Alphaproteobacteria
Sinorhizobium americanum CFNEI 73 [CP013107]
202449
202538
+
Ser
GGA
-
¡û
>C171097440
CP019630
Alphaproteobacteria
Roseibium aggregatum RMAR6-6 [CP019630]
1759769
1759858
+
Ser
GGA
-
¡û
>C171105044
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
50859
50770
-
Ser
GGA
-
¡û
>C171117302
CP021219
Alphaproteobacteria
Sinorhizobium meliloti RU11/001 [CP021219]
968945
968856
-
Ser
GGA
-
¡û
>C171123408
CP021797
Alphaproteobacteria
Sinorhizobium meliloti USDA1106 [CP021797]
1414537
1414448
-
Ser
GGA
-
¡û
>C171123631
CP021818
Alphaproteobacteria
Sinorhizobium meliloti M162 [CP021818]
284823
284912
+
Ser
GGA
-
¡û
>W131160075
AQWH01000003
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
214116
214205
+
Ser
GGA
[ENA]
¡û
>W131181122
ARNQ01000044
Alphaproteobacteria
Pannonibacter phragmitetus DSM 14782 [ARNQ]
44311
44400
+
Ser
GGA
[ENA]
¡û
>w020433
AAUW01000006
Alphaproteobacteria
Roseibium aggregatum IAM 12614 [AAUW]
116045
115954
-
Ser
GGA
[ENA]
¡û
>W141152631
AXBY01000010
Alphaproteobacteria
Labrenzia sp. C1B10 [AXBY]
54054
53965
-
Ser
GGA
[ENA]
¡û
>W141152925
AXCE01000009
Alphaproteobacteria
Labrenzia sp. C1B70 [AXCE]
54054
53965
-
Ser
GGA
[ENA]
¡û
>W141180652
AYGY02000004
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
30325
30414
+
Ser
GGA
[ENA]
¡û
>WENV170176978
CEOS01143546
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
565
654
+
Ser
GGA
[ENA]
¢þ
>WENV170529356
CEWJ01126692
[CEWJ] marine metagenome genome assembly TARA_128_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
404
315
-
Ser
GGA
[ENA]
¢þ
>WENV170739833
LULQ01018916
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
361
272
-
Ser
GGA
[ENA]
¢þ
>WENV170779824
LZQR01001331
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
958
1047
+
Ser
GGA
[ENA]
¢þ
>WENV170795489
MDSV01149515
[MDSV] marine metagenome; seawater
4829
4740
-
Ser
GGA
[ENA]
¢þ
>WENV170840419
MDSZ01204128
[MDSZ] marine metagenome; seawater
11516
11605
+
Ser
GGA
[ENA]
¢þ
>WENV170962262
MRWF01010644
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
137713
137624
-
Ser
GGA
[ENA]
¢þ
>WENV170963984
MRWG01001738
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
12681
12770
+
Ser
GGA
[ENA]
¢þ
>C191087715
CP032312
Alphaproteobacteria
Pannonibacter phragmitetus BB [CP032312]
630204
630115
-
Ser
GGA
-
¡û
>W09118280
ACCU01000016
Alphaproteobacteria
Roseibium alexandrii DFL-11 [ACCU]
22868
22779
-
Ser
GGA
[ENA]
¡û
>WENV024767
AACY020835278
Marine microbial communities from Global Ocean Sampling (GOS)
425
516
+
Ser
GGA
[ENA]
>W1910285134
FREW01000002
Alphaproteobacteria
Labrenzia sp. Alg231-36 [FREW]
756940
756851
-
Ser
GGA
[ENA]
¡û
>W1910501504
FYAN01000029
Alphaproteobacteria
Pannonibacter sp. I15F10I1 [FYAN]
419363
419452
+
Ser
GGA
[ENA]
¡û
>W1910501521
FYAO01000017
Alphaproteobacteria
Pannonibacter sp. P2PFMT1 [FYAO]
552527
552616
+
Ser
GGA
[ENA]
¡û
>W1910501563
FYAP01000006
Alphaproteobacteria
Pannonibacter sp. CS1GBFMT1 [FYAP]
351245
351334
+
Ser
GGA
[ENA]
¡û
>W1910501601
FYAQ01000003
Alphaproteobacteria
Pannonibacter sp. TSB10GB1 [FYAQ]
351245
351334
+
Ser
GGA
[ENA]
¡û
>W1911532398
OGUZ01000014
Alphaproteobacteria
Labrenzia sp. EL143 [OGUZ]
81251
81162
-
Ser
GGA
[ENA]
¡û
>W1911767326
QXER01000001
Alphaproteobacteria
Pannonibacter phragmitetus 954 [QXER]
447621
447532
-
Ser
GGA
[ENA]
¡û
>W1911767378
QXES01000002
Alphaproteobacteria
Pannonibacter phragmitetus H1-4 [QXES]
182757
182668
-
Ser
GGA
[ENA]
¡û
>W1810324345
PUDR01000009
Alphaproteobacteria
Pannonibacter carbonis Q4.6 [PUDR]
1165
1076
-
Ser
GGA
[ENA]
¡û
>W1810365585
PVUG01000009
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
114691
114602
-
Ser
GGA
[ENA]
¡û
>C151072514
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
2043890
2043979
+
Ser
GGA
[Ensembl]
¡û
>C151098054
FO082820
Alphaproteobacteria
Pseudorhizobium banfieldiae NT-26 [FO082820]
4105752
4105663
-
Ser
GGA
[Ensembl]
¡û
>W1510741226
CYHE01000003
Alphaproteobacteria
Pannonibacter indicus DSM 23407 [CYHE]
3029
2940
-
Ser
GGA
[ENA]
¡û
>C11117271
CP002568
Alphaproteobacteria
Polymorphum gilvum SL003B-26A1 [CP002568]
4059386
4059475
+
Ser
GGA
[Ensembl]
¡û
>W1511705869
LGSQ01000014
Alphaproteobacteria
Pannonibacter phragmitetus CGMCC9175 [LGSQ]
93079
92990
-
Ser
GGA
[ENA]
¡û
>C161037930
CP011927
Alphaproteobacteria
Labrenzia sp. CP4 [CP011927]
5396961
5397050
+
Ser
GGA
-
¡û
>C161050756
CP013068
Alphaproteobacteria
Pannonibacter phragmitetus 31801 [CP013068]
772902
772991
+
Ser
GGA
[Ensembl]
¡û
>C161070353
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
533104
533193
+
Ser
GGA
[Ensembl]
¡û
>W121066175
AJQP01000173
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83622 [AJQP]
326
415
+
Ser
GGA
[ENA]
¡û
>W121066259
AJQR01000199
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83666 [AJQR]
17412
17501
+
Ser
GGA
[ENA]
¡û
>W121066325
AJQS01000224
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83753 [AJQS]
18666
18577
-
Ser
GGA
[ENA]
¡û
>W1610092009
CXST01000002
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
529834
529745
-
Ser
GGA
[ENA]
¡û
>W1610092270
CXWE01000008
Alphaproteobacteria
Roseibium album alba [CXWE]
228652
228741
+
Ser
GGA
[ENA]
¡û
>W1610632321
LIPT01000003
Alphaproteobacteria
Pannonibacter indicus [LIPT]
3029
2940
-
Ser
GGA
[ENA]
¡û
>W1610724639
LMEG01000044
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
101090
101179
+
Ser
GGA
[ENA]
¡û
>W1610741030
LMRD01000010
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
3236
3147
-
Ser
GGA
[ENA]
¡û
>W1710095366
CXST01000002
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
529834
529745
-
Ser
GGA
[ENA]
¡û
>W1710095627
CXWE01000008
Alphaproteobacteria
Roseibium album alba [CXWE]
228652
228741
+
Ser
GGA
[ENA]
¡û
>W1710591634
FRBW01000001
Alphaproteobacteria
Roseibium suaedae [FRBW]
371106
371017
-
Ser
GGA
[ENA]
¡û
>W1710660273
JXMT01000092
Alphaproteobacteria
Roseibium aggregatum aggregata [JXMT]
26521
26432
-
Ser
GGA
[ENA]
¡û
>W1710766707
LIPT01000003
Alphaproteobacteria
Pannonibacter indicus [LIPT]
3029
2940
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK