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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.296290 (10 seq.)
>A171001450
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
1552825
1552898
+
Asn
GTT
-
¡û
>A171003020
CP003362
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 [CP003362]
1187481
1187409
-
Asn
GTT
-
¡û
>A171004759
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
775065
774993
-
Asn
GTT
-
¡û
>A171004761
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
774695
774621
-
Asn
GTT
-
¡û
>WENV170007882
AMWB02162888
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
642
570
-
Asn
GTT
[ENA]
¢þ
>At1350
CP000477
Euryarchaeota
Methanothrix thermoacetophila PT [CP000477]
1508808
1508891
+
Asn
GTT
[Ensembl]
¡û
>WENV170698596
LGVF01370623
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
300
226
-
Asn
GTT
[ENA]
¢þ
>W1910228343
FNMU01000006
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
99529
99456
-
Asn
GTT
[ENA]
¡û
>W1911492136
OBDR01000006
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
21218
21291
+
Asn
GTT
[ENA]
¡û
>W1610919863
LSRU01000038
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
11771
11698
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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