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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.296296 (26 seq.)
>W1711486053
MKEK01000001
Gammaproteobacteria
Rheinheimera salexigens KH87 [MKEK]
2927971
2927895
-
Arg
ACG
[ENA]
¡û
>W1712106974
NIWW01000009
Gammaproteobacteria
Lacimicrobium sp. SS2-24 [NIWW]
139857
139781
-
Arg
ACG
[ENA]
¡û
>W1712106979
NIWW01000010
Gammaproteobacteria
Lacimicrobium sp. SS2-24 [NIWW]
42725
42649
-
Arg
ACG
[ENA]
¡û
>WENV181414208
OGCL01000109
[OGCL] hot springs metagenome; Hot spring water
206
130
-
Arg
ACG
[ENA]
¢þ
>WENV181414209
OGCL01000109
[OGCL] hot springs metagenome; Hot spring water
77
1
-
Arg
ACG
[ENA]
¢þ
>WENV181414797
OGCL01001434
[OGCL] hot springs metagenome; Hot spring water
20422
20346
-
Arg
ACG
[ENA]
¢þ
>WENV181841402
OGVR01023068
[OGVR] freshwater metagenome; freshwater
163
87
-
Arg
ACG
[ENA]
¢þ
>WENV181844205
OGVV01020867
[OGVV] freshwater metagenome; freshwater
524
600
+
Arg
ACG
[ENA]
¢þ
>WENV170443824
CEUX01019632
[CEUX] marine metagenome genome assembly TARA_123_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2059
1983
-
Arg
ACG
[ENA]
¢þ
>WENV170443825
CEUX01019632
[CEUX] marine metagenome genome assembly TARA_123_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1920
1844
-
Arg
ACG
[ENA]
¢þ
>WENV170457955
CEVB01012832
[CEVB] marine metagenome genome assembly TARA_124_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
318
242
-
Arg
ACG
[ENA]
¢þ
>WENV170457956
CEVB01012832
[CEVB] marine metagenome genome assembly TARA_124_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
179
103
-
Arg
ACG
[ENA]
¢þ
>W141779383
JONU01000005
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
23217
23141
-
Arg
ACG
[ENA]
¡û
>W141779384
JONU01000005
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
23076
23000
-
Arg
ACG
[ENA]
¡û
>W1910930920
NISX01000004
Gammaproteobacteria
Lacimicrobium alkaliphilum X13M-12 [NISX]
26154
26078
-
Arg
ACG
[ENA]
¡û
>W1910930944
NISX01000009
Gammaproteobacteria
Lacimicrobium alkaliphilum X13M-12 [NISX]
61262
61186
-
Arg
ACG
[ENA]
¡û
>W1911597939
PNRD01000004
Gammaproteobacteria
Rheinheimera aquimaris B26 [PNRD]
120686
120610
-
Arg
ACG
[ENA]
¡û
>W1911597940
PNRD01000004
Gammaproteobacteria
Rheinheimera aquimaris B26 [PNRD]
120547
120471
-
Arg
ACG
[ENA]
¡û
>W1511584677
LAVS01000001
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
173586
173510
-
Arg
ACG
[ENA]
¡û
>W1511584678
LAVS01000001
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
173471
173395
-
Arg
ACG
[ENA]
¡û
>C161058105
CP013650
Gammaproteobacteria
Lacimicrobium alkaliphilum YelD216 [CP013650]
1338345
1338421
+
Arg
ACG
[Ensembl]
¡û
>C161058131
CP013650
Gammaproteobacteria
Lacimicrobium alkaliphilum YelD216 [CP013650]
3002683
3002607
-
Arg
ACG
[Ensembl]
¡û
>C161058493
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
2339212
2339288
+
Arg
ACG
-
¡û
>C161058494
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
2339353
2339429
+
Arg
ACG
-
¡û
>C161058519
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
4380067
4379991
-
Arg
ACG
-
¡û
>C161058520
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
4379926
4379850
-
Arg
ACG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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