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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.296307 (43 seq.)
>W1711766184
MUYE01000001
Alphaproteobacteria
Bartonella sp. AR 15-3 [MUYE]
468765
468840
+
Trp
CCA
[ENA]
¡û
>C171099679
CP019780
Alphaproteobacteria
Bartonella sp. A1379B [CP019780]
432591
432666
+
Trp
CCA
-
¡û
>C171099761
CP019786
Alphaproteobacteria
Bartonella sp. Raccoon60 [CP019786]
487556
487631
+
Trp
CCA
-
¡û
>C171099827
CP019787
Alphaproteobacteria
Bartonella sp. JB15 [CP019787]
836098
836023
-
Trp
CCA
-
¡û
>C171099867
CP019788
Alphaproteobacteria
Bartonella sp. JB63 [CP019788]
836147
836072
-
Trp
CCA
-
¡û
>C004019
BX897700
Alphaproteobacteria
Bartonella quintana str. Toulouse [BX897700]
854293
854218
-
Trp
CCA
[Ensembl]
¡û
>W141009660
AHPC01000001
Alphaproteobacteria
Bartonella quintana JK 67 [AHPC]
487761
487836
+
Trp
CCA
[ENA]
¡û
>W141009720
AHPD01000004
Alphaproteobacteria
Bartonella quintana JK 68 [AHPD]
63423
63348
-
Trp
CCA
[ENA]
¡û
>W141009775
AHPE01000020
Alphaproteobacteria
Bartonella quintana JK 56 [AHPE]
63340
63265
-
Trp
CCA
[ENA]
¡û
>W141009804
AHPF01000011
Alphaproteobacteria
Bartonella quintana JK 63 [AHPF]
487747
487822
+
Trp
CCA
[ENA]
¡û
>W141038076
ALVG01000029
Alphaproteobacteria
Bartonella birtlesii E11 [ALVG]
34
109
+
Trp
CCA
[ENA]
¡û
>W141038104
ALVH01000005
Alphaproteobacteria
Bartonella birtlesii E4 [ALVH]
34
109
+
Trp
CCA
[ENA]
¡û
>W141039347
ALWY01000303
Alphaproteobacteria
Bartonella birtlesii H12 [ALWY]
2756
2681
-
Trp
CCA
[ENA]
¡û
>WENV181324729
OFLH01000983
[OFLH] marine metagenome; sea ice
288
213
-
Trp
CCA
[ENA]
¢þ
>W141190300
AYOD01000001
Alphaproteobacteria
Aliihoeflea sp. 2WW [AYOD]
136218
136293
+
Trp
CCA
[ENA]
¡û
>W141222621
AZZV01000001
Alphaproteobacteria
Bartonella quintana BQ2-D70 [AZZV]
103804
103729
-
Trp
CCA
[ENA]
¡û
>W141222704
AZZX01000009
Alphaproteobacteria
Bartonella quintana JK 73 [AZZX]
487145
487220
+
Trp
CCA
[ENA]
¡û
>W141222789
AZZZ01000008
Alphaproteobacteria
Bartonella quintana JK 7 [AZZZ]
486592
486667
+
Trp
CCA
[ENA]
¡û
>W141245839
CALU01000002
Alphaproteobacteria
Bartonella florencae R4(2010) [CALU]
42
117
+
Trp
CCA
[ENA]
¡û
>W141245875
CALV01000002
Alphaproteobacteria
Bartonella senegalensis OS02 [CALV]
64300
64225
-
Trp
CCA
[ENA]
¡û
>C08002159
AM260525
Alphaproteobacteria
Bartonella tribocorum CIP 105476 type strain:506 [AM260525]
950644
950719
+
Trp
CCA
[Ensembl]
¡û
>W141275397
JACX01000006
Alphaproteobacteria
Bartonella grahamii ATCC 700132 [JACX]
130851
130776
-
Trp
CCA
[ENA]
¡û
>W141275459
JACY01000022
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii ATCC 51672 [JACY]
12932
12857
-
Trp
CCA
[ENA]
¡û
>W141275613
JADC01000010
Alphaproteobacteria
Bartonella clarridgeiae ATCC 51734 [JADC]
285729
285654
-
Trp
CCA
[ENA]
¡û
>WENV170008172
AMZC01003537
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
4001
3926
-
Trp
CCA
[ENA]
¢þ
>WENV170221745
CEQC01005293
[CEQC] marine metagenome genome assembly TARA_076_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2613
2688
+
Trp
CCA
[ENA]
¢þ
>WENV170234110
CEQK01007310
[CEQK] marine metagenome genome assembly TARA_076_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
10390
10315
-
Trp
CCA
[ENA]
¢þ
>WENV170320805
CESR01011411
[CESR] marine metagenome genome assembly TARA_100_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
113
188
+
Trp
CCA
[ENA]
¢þ
>WENV170372744
CETS01130204
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
254
329
+
Trp
CCA
[ENA]
¢þ
>C181037912
CP019489
Alphaproteobacteria
Bartonella sp. 1-1C [CP019489]
495486
495560
+
Trp
CCA
-
¡û
>C191214168
LR134527
Alphaproteobacteria
Bartonella elizabethae NCTC12898 [LR134527]
962798
962723
-
Trp
CCA
-
¡û
>W1910954259
NJPP01000014
Alphaproteobacteria
Bartonella tribocorum C635 [NJPP]
44049
43974
-
Trp
CCA
[ENA]
¡û
>C09102289
CP001562
Alphaproteobacteria
Bartonella grahamii as4aup [CP001562]
830019
830094
+
Trp
CCA
[Ensembl]
¡û
>W1810608960
QGTR01000001
Alphaproteobacteria
Hoeflea marina DSM 16791 [QGTR]
288213
288288
+
Trp
CCA
[ENA]
¡û
>C151102045
HG969192
Alphaproteobacteria
Bartonella tribocorum BM1374166 [HG969192]
951663
951738
+
Trp
CCA
[Ensembl]
¡û
>C11102687
FN645454
Alphaproteobacteria
Bartonella clarridgeiae 73 [FN645454]
1001295
1001220
-
Trp
CCA
[Ensembl]
¡û
>W121059277
AILY01000017
Alphaproteobacteria
Bartonella rattimassiliensis 15908 [AILY]
61525
61600
+
Trp
CCA
[ENA]
¡û
>W121059333
AILZ01000032
Alphaproteobacteria
Bartonella vinsonii subsp. arupensis OK-94-513 [AILZ]
60980
61055
+
Trp
CCA
[ENA]
¡û
>W121059050
AILT01000004
Alphaproteobacteria
Bartonella sp. DB5-6 [AILT]
64072
63997
-
Trp
CCA
[ENA]
¡û
>W121059098
AILU01000003
Alphaproteobacteria
Bartonella washoeensis Sb944nv [AILU]
443575
443650
+
Trp
CCA
[ENA]
¡û
>W121059551
AIMF01000013
Alphaproteobacteria
Bartonella elizabethae F9251 [AIMF]
35088
35163
+
Trp
CCA
[ENA]
¡û
>W1710587492
FQYO01000002
Alphaproteobacteria
Wenxinia saemankumensis [FQYO]
222106
222181
+
Trp
CCA
[ENA]
¡û
>W1710721080
LFMF01000002
Alphaproteobacteria
Bartonella elizabethae [LFMF]
89
164
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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