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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29645 (27 seq.)
>W1711718115
MTHE01000008
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
156599
156510
-
Ser
CGA
[ENA]
¡û
>W1712106194
NIVP01000018
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
6871
6782
-
Ser
CGA
[ENA]
¡û
>W131218244
ATXN01000002
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
780348
780437
+
Ser
CGA
[ENA]
¡û
>WENV180014233
FPIC01106516
[FPIC] soil metagenome; Soil
41
129
+
Ser
CGA
[ENA]
¢þ
>W141043021
AMFA01000127
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
41822
41911
+
Ser
CGA
[ENA]
¡û
>WENV183727721
PJTP01000098
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
35081
34992
-
Ser
CGA
[ENA]
¢þ
>WENV183728447
PJTQ01000057
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
41997
42086
+
Ser
CGA
[ENA]
¢þ
>WENV183730997
PJTS01003563
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
2347
2258
-
Ser
CGA
[ENA]
¢þ
>WENV183733535
PJTY01003816
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
761
672
-
Ser
CGA
[ENA]
¢þ
>WENV183735438
PJUB01000004
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
407499
407410
-
Ser
CGA
[ENA]
¢þ
>WENV183738970
PJUE01000678
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
10285
10374
+
Ser
CGA
[ENA]
¢þ
>WENV183740284
PJUF01001005
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
8524
8613
+
Ser
CGA
[ENA]
¢þ
>WENV170574396
FLYM01033864
[FLYM] hot springs metagenome; Sediment
7514
7425
-
Ser
CGA
[ENA]
¢þ
>WENV170645977
JQGF01002910
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
114
203
+
Ser
CGA
[ENA]
¢þ
>C191094018
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
2047947
2047858
-
Ser
CGA
-
¡û
>C191134454
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
1766017
1765928
-
Ser
CGA
-
¡û
>C191157414
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
452878
452789
-
Ser
CGA
-
¡û
>C191189147
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
1144730
1144641
-
Ser
CGA
-
¡û
>W141551948
JHOF01000026
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
121589
121500
-
Ser
CGA
[ENA]
¡û
>W1910182699
BJNC01000025
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
5633
5544
-
Ser
CGA
[ENA]
¡û
>W1910374343
FUIE01000072
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
452
363
-
Ser
CGA
[ENA]
¡û
>W1910725269
MGLK01000025
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_70_19 [MGLK]
35733
35822
+
Ser
CGA
[ENA]
¡û
>W1911760348
QWTZ01000006
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
42801
42890
+
Ser
CGA
[ENA]
¡û
>W11123416
ADUI01000072
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
6750
6661
-
Ser
CGA
[ENA]
¡û
>W1511596063
LBNT01000008
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
10292
10203
-
Ser
CGA
[ENA]
¡û
>C161089817
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
1686514
1686603
+
Ser
CGA
[Ensembl]
¡û
>W1710576208
FOZV01000012
Alphaproteobacteria
Brevundimonas viscosa [FOZV]
774
685
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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