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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29656 (42 seq.)
>W1710785084
LJHO01000002
Alphaproteobacteria
Novosphingobium sp. AAP1 [LJHO]
781540
781451
-
Ser
CGA
[ENA]
¡û
>W1710858220
LMAU01000003
Alphaproteobacteria
Tsuneonella troitsensis [LMAU]
44560
44649
+
Ser
CGA
[ENA]
¡û
>W1711072905
LSIA01000213
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
14640
14729
+
Ser
CGA
[ENA]
¡û
>W1711387038
MEGD01000008
Alphaproteobacteria
Novosphingobium sp. SCN 66-18 [MEGD]
135342
135431
+
Ser
CGA
[ENA]
¡û
>W131104462
APCQ01000351
Alphaproteobacteria
Novosphingobium sp. B-7 [APCQ]
1554
1643
+
Ser
CGA
[ENA]
¡û
>C014714
CP000248
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [CP000248]
2679785
2679696
-
Ser
CGA
[Ensembl]
¡û
>WENV181192005
OEPS010335689
[OEPS] soil metagenome; soil
40
129
+
Ser
CGA
[ENA]
¢þ
>WENV181223006
OFDC01001090
[OFDC] hot springs metagenome; Water
3311
3222
-
Ser
CGA
[ENA]
¢þ
>WENV181417071
OGCL01218968
[OGCL] hot springs metagenome; Hot spring water
357
446
+
Ser
CGA
[ENA]
¢þ
>WENV183749774
PPFU01211923
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2846
2757
-
Ser
CGA
[ENA]
¢þ
>WENV170010396
APMI01015915
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
10858
10769
-
Ser
CGA
[ENA]
¢þ
>WENV171003504
NNBU01000221
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
82798
82887
+
Ser
CGA
[ENA]
¢þ
>WENV171003930
NNBV01004675
[NNBV] plant metagenome; symbiotic tissue sample KVS11
103426
103515
+
Ser
CGA
[ENA]
¢þ
>C191057068
CP028347
Alphaproteobacteria
Novosphingobium sp. THN1 [CP028347]
35575
35486
-
Ser
CGA
-
¡û
>W09100332
AAAV03000005
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [AAAV]
337949
337860
-
Ser
CGA
[ENA]
¡û
>C191155739
CP037948
Alphaproteobacteria
Qipengyuania sediminis CGMCC 1.12928 [CP037948]
167012
167101
+
Ser
CGA
-
¡û
>C191170989
CP039695
Alphaproteobacteria
Novosphingobium sp. EMRT-2 [CP039695]
671964
671875
-
Ser
CGA
-
¡û
>W1911737874
QTTB01000004
Alphaproteobacteria
Tsuneonella troitsensis KMM 6042 [QTTB]
42908
42997
+
Ser
CGA
[ENA]
¡û
>W1810239619
PPSM01000028
Alphaproteobacteria
Novosphingobium sp. HII-3 [PPSM]
202
113
-
Ser
CGA
[ENA]
¡û
>W1810463746
PZZU01000020
Alphaproteobacteria
Novosphingobium sp. GV064 [PZZU]
56421
56332
-
Ser
CGA
[ENA]
¡û
>W1810477337
QAOS01000020
Alphaproteobacteria
Novosphingobium sp. GV055 [QAOS]
56421
56332
-
Ser
CGA
[ENA]
¡û
>W1810513891
QBUA01000020
Alphaproteobacteria
Novosphingobium sp. GV061 [QBUA]
56421
56332
-
Ser
CGA
[ENA]
¡û
>W1810514104
QBUE01000020
Alphaproteobacteria
Novosphingobium sp. GV079 [QBUE]
56421
56332
-
Ser
CGA
[ENA]
¡û
>W1810514313
QBUI01000020
Alphaproteobacteria
Novosphingobium sp. GV027 [QBUI]
56421
56332
-
Ser
CGA
[ENA]
¡û
>W1810597625
QGHL01000011
Alphaproteobacteria
Novosphingobium meiothermophilum SYSU G00007 [QGHL]
1441
1530
+
Ser
CGA
[ENA]
¡û
>W1810677151
QKMM01000030
Alphaproteobacteria
Novosphingobium sp. B3058 49 [QKMM]
20473
20562
+
Ser
CGA
[ENA]
¡û
>W1510019757
BBXA01000030
Alphaproteobacteria
Novosphingobium sp. MD-1 [BBXA]
247591
247680
+
Ser
CGA
[ENA]
¡û
>W1511357032
JRVC01000028
Alphaproteobacteria
Novosphingobium subterraneum DSM 12447 [JRVC]
14674
14763
+
Ser
CGA
[ENA]
¡û
>WENV056227
AACY023251536
Marine microbial communities from Global Ocean Sampling (GOS)
555
464
-
Ser
CGA
[ENA]
>C161099927
CP016591
Alphaproteobacteria
Tsuneonella dongtanensis KCTC 22672 [CP016591]
1089801
1089890
+
Ser
CGA
[Ensembl]
¡û
>W1610076581
BCYV01000030
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
27032
27121
+
Ser
CGA
[ENA]
¡û
>W1610077060
BCZF01000043
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
15872
15783
-
Ser
CGA
[ENA]
¡û
>W1610590970
LDRW01000007
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
80873
80784
-
Ser
CGA
[ENA]
¡û
>W1610648890
LJHO01000002
Alphaproteobacteria
Novosphingobium sp. AAP1 [LJHO]
781540
781451
-
Ser
CGA
[ENA]
¡û
>W1610720566
LMAU01000003
Alphaproteobacteria
Tsuneonella troitsensis [LMAU]
44560
44649
+
Ser
CGA
[ENA]
¡û
>W1610912165
LSIA01000213
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
14640
14729
+
Ser
CGA
[ENA]
¡û
>W1710074270
BCYV01000030
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
27032
27121
+
Ser
CGA
[ENA]
¡û
>W1710074749
BCZF01000043
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
15872
15783
-
Ser
CGA
[ENA]
¡û
>W1710507986
FMVR01000003
Alphaproteobacteria
Novosphingobium aromaticivorans stygium [FMVR]
345443
345354
-
Ser
CGA
[ENA]
¡û
>W1710562068
FOOR01000005
Alphaproteobacteria
Novosphingobium sp. CF614 [FOOR]
213280
213369
+
Ser
CGA
[ENA]
¡û
>W1710606011
FWXL01000013
Alphaproteobacteria
Novosphingobium sp. B1 [FWXL]
50018
49929
-
Ser
CGA
[ENA]
¡û
>W1710710250
LDRW01000007
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
80873
80784
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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