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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29663 (69 seq.)
>W1710864959
LMGH01000010
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
427331
427242
-
Ser
TGA
[ENA]
¡û
>W1710865779
LMGY01000008
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
76538
76627
+
Ser
TGA
[ENA]
¡û
>W1710865900
LMHA01000003
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
465728
465817
+
Ser
TGA
[ENA]
¡û
>W1710866716
LMHR01000088
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
428893
428982
+
Ser
TGA
[ENA]
¡û
>W1710880616
LMSL01000036
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
59794
59705
-
Ser
TGA
[ENA]
¡û
>W1711073099
LSIF01000101
Gammaproteobacteria
Pseudoxanthomonas mexicana [LSIF]
744
655
-
Ser
TGA
[ENA]
¡û
>W1711147551
LVJS01000106
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
19
108
+
Ser
TGA
[ENA]
¡û
>W1711421698
MHZQ01000247
Gammaproteobacteria
Rhodanobacter sp. RIFOXYA1_FULL_67_6 [MHZQ]
2128
2217
+
Ser
TGA
[ENA]
¡û
>W131046186
AMSF01000016
Gammaproteobacteria
Dyella ginsengisoli LA-4 [AMSF]
84636
84547
-
Ser
TGA
[ENA]
¡û
>W1711751277
MUNP01000070
Gammaproteobacteria
Rhodanobacter sp. C06 [MUNP]
1092
1003
-
Ser
TGA
[ENA]
¡û
>W1711751314
MUNQ01000016
Gammaproteobacteria
Rhodanobacter sp. C05 [MUNQ]
129078
128989
-
Ser
TGA
[ENA]
¡û
>W1711751485
MUNU01000014
Gammaproteobacteria
Rhodanobacter sp. B05 [MUNU]
208838
208749
-
Ser
TGA
[ENA]
¡û
>W1711751519
MUNV01000008
Gammaproteobacteria
Rhodanobacter sp. B04 [MUNV]
81515
81604
+
Ser
TGA
[ENA]
¡û
>WENV180017886
FSXU01000040
[FSXU] metagenome; soil
2083
2172
+
Ser
TGA
[ENA]
¢þ
>WENV180099581
NMRC01019340
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
3730
3819
+
Ser
TGA
[ENA]
¢þ
>WENV181308090
OFIS01000202
[OFIS] sludge metagenome; sludge
18372
18461
+
Ser
TGA
[ENA]
¢þ
>WENV181401388
OFTX01000088
[OFTX] sludge metagenome; sludge
38717
38628
-
Ser
TGA
[ENA]
¢þ
>WENV181402187
OFTY01000208
[OFTY] sludge metagenome; sludge
38709
38620
-
Ser
TGA
[ENA]
¢þ
>W141170529
AXYI01000011
Gammaproteobacteria
Xanthomonadaceae bacterium JGI 0001020-F16 [AXYI]
33750
33839
+
Ser
TGA
[ENA]
¡û
>WENV183698076
OUNK011131735
[OUNK] metagenome; soil
7572
7483
-
Ser
TGA
[ENA]
¢þ
>WENV170705818
LNAP01000391
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
27318
27229
-
Ser
TGA
[ENA]
¢þ
>C191138598
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
3220916
3221005
+
Ser
TGA
-
¡û
>C191186036
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
2680620
2680531
-
Ser
TGA
-
¡û
>W141821291
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
343949
343860
-
Ser
TGA
[ENA]
¡û
>W1911199828
NRDP01000040
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
17363
17452
+
Ser
TGA
[ENA]
¡û
>SRA1003339
SRR002326.400847
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
133
44
-
Ser
TGA
[SRA]
>W1810195891
PKSO01000002
Gammaproteobacteria
Pseudoxanthomonas sp. KAs_5_3 [PKSO]
1253404
1253315
-
Ser
TGA
[ENA]
¡û
>W1810477557
QAOX01000002
Gammaproteobacteria
Luteibacter sp. OK325 [QAOX]
790984
790895
-
Ser
TGA
[ENA]
¡û
>W1810485607
QAVX01000040
Gammaproteobacteria
Dyella sp. C11 [QAVX]
1918
2007
+
Ser
TGA
[ENA]
¡û
>W1810628330
QICJ01000001
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
51925
51836
-
Ser
TGA
[ENA]
¡û
>W1810629439
QIRF01000019
Gammaproteobacteria
Dyella sp. C9 [QIRF]
11765
11676
-
Ser
TGA
[ENA]
¡û
>W1810785117
QRBE01000029
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
60
149
+
Ser
TGA
[ENA]
¡û
>W1810785138
QRBF01000001
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
827142
827053
-
Ser
TGA
[ENA]
¡û
>C151023755
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
2234824
2234735
-
Ser
TGA
[Ensembl]
¡û
>C151039112
CP008884
Gammaproteobacteria
Dyella japonica A8 [CP008884]
3295020
3294931
-
Ser
TGA
[Ensembl]
¡û
>W1511305062
JPLA01000024
Gammaproteobacteria
Dyella japonica DSM 16301 [JPLA]
98361
98450
+
Ser
TGA
[ENA]
¡û
>W1511305105
JPLB01000029
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 [JPLB]
5171
5260
+
Ser
TGA
[ENA]
¡û
>W1511305251
JPLD01000156
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
11998
11909
-
Ser
TGA
[ENA]
¡û
>W1511433921
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
2413450
2413361
-
Ser
TGA
[ENA]
¡û
>W1511547585
JZRB01000025
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
119335
119246
-
Ser
TGA
[ENA]
¡û
>W1511686267
LFQR01000007
Gammaproteobacteria
Frateuria defendens Hyalesthes Obsoletus HyOG [LFQR]
57994
58083
+
Ser
TGA
[ENA]
¡û
>C121011584
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
2409185
2409096
-
Ser
TGA
[Ensembl]
¡û
>W121017556
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
291424
291513
+
Ser
TGA
[ENA]
¡û
>W121071271
AJXU01000003
Gammaproteobacteria
Rhodanobacter fulvus Jip2 [AJXU]
10064
10153
+
Ser
TGA
[ENA]
¡û
>W121071410
AJXW01000122
Gammaproteobacteria
Rhodanobacter thiooxydans LCS2 [AJXW]
3605
3694
+
Ser
TGA
[ENA]
¡û
>W121113916
ALOY01000184
Gammaproteobacteria
Dyella japonica A8 [ALOY]
2027
2116
+
Ser
TGA
[ENA]
¡û
>W1610616791
LGRQ01000293
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
4233
4322
+
Ser
TGA
[ENA]
¡û
>W1610727305
LMGH01000010
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
427331
427242
-
Ser
TGA
[ENA]
¡û
>W1610728125
LMGY01000008
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
76538
76627
+
Ser
TGA
[ENA]
¡û
>W1610728246
LMHA01000003
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
465728
465817
+
Ser
TGA
[ENA]
¡û
>W1610729062
LMHR01000088
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
428893
428982
+
Ser
TGA
[ENA]
¡û
>W1610742962
LMSL01000036
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
59794
59705
-
Ser
TGA
[ENA]
¡û
>W1610912404
LSIF01000101
Gammaproteobacteria
Pseudoxanthomonas mexicana [LSIF]
744
655
-
Ser
TGA
[ENA]
¡û
>W1610958504
LVJS01000106
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
19
108
+
Ser
TGA
[ENA]
¡û
>ENV000953
AY212800
Environmental sample from ENV division of INSDC
37218
37309
+
Ser
TGA
[ENA]
>W1710515264
FNBR01000001
Gammaproteobacteria
Dyella sp. 333MFSha [FNBR]
863118
863207
+
Ser
TGA
[ENA]
¡û
>W1710519808
FNFA01000004
Gammaproteobacteria
Dyella jiangningensis [FNFA]
361350
361439
+
Ser
TGA
[ENA]
¡û
>W1710527420
FNKZ01000003
Gammaproteobacteria
Pseudoxanthomonas sp. CF385 [FNKZ]
117062
116973
-
Ser
TGA
[ENA]
¡û
>W1710544588
FOAX01000002
Gammaproteobacteria
Pseudoxanthomonas sp. GM95 [FOAX]
1443726
1443815
+
Ser
TGA
[ENA]
¡û
>W1710545813
FOBU01000002
Gammaproteobacteria
Luteibacter sp. UNCMF331Sha3.1 [FOBU]
1159547
1159636
+
Ser
TGA
[ENA]
¡û
>W1710548718
FODZ01000004
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
11333
11422
+
Ser
TGA
[ENA]
¡û
>W1710555185
FOJE01000001
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
846237
846326
+
Ser
TGA
[ENA]
¡û
>W1710567349
FOSR01000007
Gammaproteobacteria
Rhodanobacter glycinis [FOSR]
35
124
+
Ser
TGA
[ENA]
¡û
>W1710575660
FOZI01000003
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
24279
24368
+
Ser
TGA
[ENA]
¡û
>W1710579383
FPCI01000001
Gammaproteobacteria
Pseudoxanthomonas sp. YR558 [FPCI]
217328
217417
+
Ser
TGA
[ENA]
¡û
>W1710579664
FPIS01000001
Gammaproteobacteria
Luteibacter sp. UNCMF366Tsu5.1 [FPIS]
844367
844278
-
Ser
TGA
[ENA]
¡û
>W1710603040
FUYT01000001
Gammaproteobacteria
Luteibacter sp. 22Crub2.1 [FUYT]
341622
341533
-
Ser
TGA
[ENA]
¡û
>W1710604297
FUZV01000002
Gammaproteobacteria
Pseudoxanthomonas indica [FUZV]
1377346
1377435
+
Ser
TGA
[ENA]
¡û
>W1710742130
LGRQ01000293
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
4233
4322
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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