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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.296670 (100 seq.)
>W131203551
ASZJ01000080
Gammaproteobacteria
Osedax symbiont Rs1 [ASZJ]
26501
26576
+
Thr
TGT
[ENA]
¡û
>W131203579
ASZJ01000164
Gammaproteobacteria
Osedax symbiont Rs1 [ASZJ]
43625
43550
-
Thr
TGT
[ENA]
¡û
>W131203580
ASZJ01000164
Gammaproteobacteria
Osedax symbiont Rs1 [ASZJ]
43510
43435
-
Thr
TGT
[ENA]
¡û
>W131235437
AULO01000014
Gammaproteobacteria
Marinospirillum minutulum DSM 6287 [AULO]
26231
26306
+
Thr
TGT
[ENA]
¡û
>W1711621565
MPDF01000082
Gammaproteobacteria
Gammaproteobacteria bacterium MedPE [MPDF]
13019
13094
+
Thr
TGT
[ENA]
¡û
>C171108647
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
1536491
1536416
-
Thr
TGT
-
¡û
>w016584
AAQH01000003
Gammaproteobacteria
Bermanella marisrubri RED65 [AAQH]
191108
191031
-
Thr
TGT
[ENA]
¡û
>w014089
AAOE01000011
Gammaproteobacteria
Reinekea blandensis MED297 [AAOE]
106055
105983
-
Thr
TGT
[ENA]
¡û
>WENV181317057
OFJW01007790
[OFJW] marine metagenome; seawater
312
387
+
Thr
TGT
[ENA]
¢þ
>WENV181323564
OFKY01007414
[OFKY] marine metagenome; sea ice
514
439
-
Thr
TGT
[ENA]
¢þ
>WENV182540754
OJAP01004581
[OJAP] seawater metagenome; Sea water
47
122
+
Thr
TGT
[ENA]
¢þ
>WENV182543705
OJBC01000454
[OJBC] seawater metagenome; Sea water
1199
1124
-
Thr
TGT
[ENA]
¢þ
>WENV182544606
OJBI01000120
[OJBI] seawater metagenome; Sea water
13100
13025
-
Thr
TGT
[ENA]
¢þ
>WENV182544702
OJBJ01000042
[OJBJ] seawater metagenome; Sea water
21695
21620
-
Thr
TGT
[ENA]
¢þ
>WENV182544733
OJBJ01000391
[OJBJ] seawater metagenome; Sea water
1132
1207
+
Thr
TGT
[ENA]
¢þ
>WENV182544776
OJBJ01002183
[OJBJ] seawater metagenome; Sea water
470
395
-
Thr
TGT
[ENA]
¢þ
>WENV182545142
OJBM01000261
[OJBM] seawater metagenome; Sea water
1
76
+
Thr
TGT
[ENA]
¢þ
>WENV182547691
OJBT01000705
[OJBT] seawater metagenome; Sea water
4119
4194
+
Thr
TGT
[ENA]
¢þ
>WENV182552426
OJCK01000055
[OJCK] seawater metagenome; Sea water
30522
30597
+
Thr
TGT
[ENA]
¢þ
>WENV182557538
OJDK01000131
[OJDK] seawater metagenome; Sea water
30342
30267
-
Thr
TGT
[ENA]
¢þ
>WENV182557547
OJDK01000167
[OJDK] seawater metagenome; Sea water
31974
31899
-
Thr
TGT
[ENA]
¢þ
>WENV182559992
OJDR01000097
[OJDR] seawater metagenome; Sea water
10813
10738
-
Thr
TGT
[ENA]
¢þ
>WENV182560806
OJDV01000014
[OJDV] seawater metagenome; Sea water
152897
152822
-
Thr
TGT
[ENA]
¢þ
>WENV182566266
OJEJ01004796
[OJEJ] seawater metagenome; Sea water
672
747
+
Thr
TGT
[ENA]
¢þ
>WENV182566966
OJEN01000205
[OJEN] seawater metagenome; Sea water
20451
20526
+
Thr
TGT
[ENA]
¢þ
>WENV182567329
OJEO01000078
[OJEO] seawater metagenome; Sea water
23139
23214
+
Thr
TGT
[ENA]
¢þ
>WENV182567330
OJEO01000080
[OJEO] seawater metagenome; Sea water
21062
21137
+
Thr
TGT
[ENA]
¢þ
>WENV182568641
OJEW01000068
[OJEW] seawater metagenome; Sea water
31974
31899
-
Thr
TGT
[ENA]
¢þ
>WENV182568642
OJEW01000072
[OJEW] seawater metagenome; Sea water
20538
20613
+
Thr
TGT
[ENA]
¢þ
>WENV182576963
OJGC01000016
[OJGC] seawater metagenome; Sea water
15666
15741
+
Thr
TGT
[ENA]
¢þ
>WENV182577628
OJGH01000036
[OJGH] seawater metagenome; Sea water
21414
21489
+
Thr
TGT
[ENA]
¢þ
>WENV182577629
OJGH01000040
[OJGH] seawater metagenome; Sea water
20538
20613
+
Thr
TGT
[ENA]
¢þ
>WENV182587274
OJHM01000096
[OJHM] seawater metagenome; Sea water
13068
13143
+
Thr
TGT
[ENA]
¢þ
>WENV182587906
OJHO01000073
[OJHO] seawater metagenome; Sea water
15878
15953
+
Thr
TGT
[ENA]
¢þ
>WENV182588049
OJHO01001512
[OJHO] seawater metagenome; Sea water
5486
5411
-
Thr
TGT
[ENA]
¢þ
>WENV182590637
OJIJ01000971
[OJIJ] seawater metagenome; Sea water
2111
2036
-
Thr
TGT
[ENA]
¢þ
>WENV183056530
OLHJ01000505
[OLHJ] seawater metagenome; Sea water
11344
11419
+
Thr
TGT
[ENA]
¢þ
>WENV183056976
OLHK01000129
[OLHK] seawater metagenome; Sea water
15598
15523
-
Thr
TGT
[ENA]
¢þ
>WENV183058263
OLHP01000082
[OLHP] seawater metagenome; Sea water
6630
6705
+
Thr
TGT
[ENA]
¢þ
>WENV183059551
OLHV01000001
[OLHV] seawater metagenome; Sea water
248786
248861
+
Thr
TGT
[ENA]
¢þ
>WENV183065210
OLII01059222
[OLII] seawater metagenome; Sea water
84
9
-
Thr
TGT
[ENA]
¢þ
>WENV183614715
OODW01043937
[OODW] marine metagenome; sea ice
231
156
-
Thr
TGT
[ENA]
¢þ
>WENV183615079
OOEA01051845
[OOEA] marine metagenome; sea ice
271
196
-
Thr
TGT
[ENA]
¢þ
>WENV183620337
OOFR01034949
[OOFR] marine metagenome; seawater
121
46
-
Thr
TGT
[ENA]
¢þ
>WENV183710533
PDWI01048447
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
985
1060
+
Thr
TGT
[ENA]
¢þ
>WENV183718603
PDWJ01005320
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2393
2318
-
Thr
TGT
[ENA]
¢þ
>WENV170266742
CERE01104844
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
595
670
+
Thr
TGT
[ENA]
¢þ
>WENV170298056
CESF01041031
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2631
2556
-
Thr
TGT
[ENA]
¢þ
>WENV170779896
MAAA01000877
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
4179
4104
-
Thr
TGT
[ENA]
¢þ
>WENV170779904
MAAA01001284
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
36
111
+
Thr
TGT
[ENA]
¢þ
>WENV170779923
MAAA01003046
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
25
100
+
Thr
TGT
[ENA]
¢þ
>WENV170779961
MAAA01004417
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
8
83
+
Thr
TGT
[ENA]
¢þ
>WENV170780019
MAAA01008958
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
825
750
-
Thr
TGT
[ENA]
¢þ
>WENV170780050
MAAA01010848
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
33
108
+
Thr
TGT
[ENA]
¢þ
>WENV170780061
MAAA01011231
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
7446
7371
-
Thr
TGT
[ENA]
¢þ
>WENV170780072
MAAA01012609
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
1440
1365
-
Thr
TGT
[ENA]
¢þ
>WENV170780107
MAAA01014482
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
37
112
+
Thr
TGT
[ENA]
¢þ
>WENV170780108
MAAA01014482
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
9692
9767
+
Thr
TGT
[ENA]
¢þ
>WENV170780153
MAAA01017629
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
36
111
+
Thr
TGT
[ENA]
¢þ
>WENV170780284
MAAA01026774
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
1319
1244
-
Thr
TGT
[ENA]
¢þ
>WENV170780349
MAAA01029954
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
1018
943
-
Thr
TGT
[ENA]
¢þ
>WENV170780390
MAAB01000147
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
44
119
+
Thr
TGT
[ENA]
¢þ
>WENV170780614
MAAB01008146
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4719
4644
-
Thr
TGT
[ENA]
¢þ
>WENV170780640
MAAB01010352
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
33
108
+
Thr
TGT
[ENA]
¢þ
>WENV170780709
MAAB01015698
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
996
921
-
Thr
TGT
[ENA]
¢þ
>WENV170780817
MAAB01024223
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
3125
3050
-
Thr
TGT
[ENA]
¢þ
>WENV170780820
MAAB01024261
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
3083
3008
-
Thr
TGT
[ENA]
¢þ
>WENV170781400
MAAB01033816
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
17487
17412
-
Thr
TGT
[ENA]
¢þ
>WENV170781467
MAAB01036583
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1614
1689
+
Thr
TGT
[ENA]
¢þ
>WENV170781473
MAAB01036837
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1370
1295
-
Thr
TGT
[ENA]
¢þ
>WENV170781597
MAAB01038511
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
14179
14254
+
Thr
TGT
[ENA]
¢þ
>WENV170781602
MAAB01038570
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
2570
2645
+
Thr
TGT
[ENA]
¢þ
>WENV170781603
MAAB01038570
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
2693
2768
+
Thr
TGT
[ENA]
¢þ
>WENV170781727
MAAB01042814
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
133
58
-
Thr
TGT
[ENA]
¢þ
>WENV170782561
MAAC01010319
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
596
521
-
Thr
TGT
[ENA]
¢þ
>WENV170782608
MAAC01010640
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
26045
26120
+
Thr
TGT
[ENA]
¢þ
>WENV170782609
MAAC01010640
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
26168
26243
+
Thr
TGT
[ENA]
¢þ
>WENV170783910
MAAC01019545
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
295
220
-
Thr
TGT
[ENA]
¢þ
>WENV170923353
MDTG01047958
[MDTG] marine metagenome; seawater
1782
1707
-
Thr
TGT
[ENA]
¢þ
>WENV170950712
MEHZ011512831
[MEHZ] marine metagenome; marine surface water
3693
3768
+
Thr
TGT
[ENA]
¢þ
>C181010961
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
383732
383807
+
Thr
TGT
-
¡û
>C191156003
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
4300732
4300807
+
Thr
TGT
-
¡û
>C191156005
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
4300929
4301004
+
Thr
TGT
-
¡û
>C191156007
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
5381102
5381027
-
Thr
TGT
-
¡û
>W141702974
JMLW01000001
Gammaproteobacteria
Marinospirillum insulare DSM 21763 [JMLW]
86722
86647
-
Thr
TGT
[ENA]
¡û
>W1910923638
NIHB01000001
Gammaproteobacteria
Marinicella litoralis KMM 3900 [NIHB]
33442
33367
-
Thr
TGT
[ENA]
¡û
>W1911581957
PGVH01000047
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
95056
94981
-
Thr
TGT
[ENA]
¡û
>W1911581959
PGVH01000047
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
94847
94772
-
Thr
TGT
[ENA]
¡û
>W1911585097
PIPQ01000002
Gammaproteobacteria
Aliidiomarina taiwanensis AIT1 [PIPQ]
163092
163167
+
Thr
TGT
[ENA]
¡û
>W1911809503
QYYH01000118
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
3636
3561
-
Thr
TGT
[ENA]
¡û
>W1911809505
QYYH01000118
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
3439
3364
-
Thr
TGT
[ENA]
¡û
>W1911809509
QYYH01000175
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
7588
7663
+
Thr
TGT
[ENA]
¡û
>W1911812337
QZEI01000030
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
39973
40048
+
Thr
TGT
[ENA]
¡û
>W1810154341
PIZK01000021
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
124930
125005
+
Thr
TGT
[ENA]
¡û
>W1810154352
PIZK01000034
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
28178
28253
+
Thr
TGT
[ENA]
¡û
>W1810157865
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
4506258
4506183
-
Thr
TGT
[ENA]
¡û
>C151098093
FO203512
Gammaproteobacteria
Oleispira antarctica RB-8 [FO203512]
4371586
4371511
-
Thr
TGT
[Ensembl]
¡û
>C151103893
LN681227
Gammaproteobacteria
Xenorhabdus nematophila AN6/1 [LN681227]
257787
257862
+
Thr
TGT
[Ensembl]
¡û
>C10114260
FN667742
Gammaproteobacteria
Xenorhabdus nematophila ATCC 19061 [FN667742]
257785
257860
+
Thr
TGT
[Ensembl]
¡û
>W1710578204
FPBJ01000069
Gammaproteobacteria
Xenorhabdus koppenhoeferi [FPBJ]
641
566
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK