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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.296684 (127 seq.)
>W1710882007
LMTK01000117
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LMTK]
119039
118964
-
Thr
GGT
[ENA]
¡û
>W1710882008
LMTK01000128
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LMTK]
868
943
+
Thr
GGT
[ENA]
¡û
>W1711051011
LRRV01000011
Gammaproteobacteria
Aeromonas hydrophila [LRRV]
72583
72508
-
Thr
GGT
[ENA]
¡û
>W1711051106
LRRW01000011
Gammaproteobacteria
Aeromonas hydrophila [LRRW]
337
412
+
Thr
GGT
[ENA]
¡û
>W1711051293
LRRY01000015
Gammaproteobacteria
Aeromonas hydrophila [LRRY]
72698
72623
-
Thr
GGT
[ENA]
¡û
>W1711071695
LSGX01000001
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGX]
125
200
+
Thr
GGT
[ENA]
¡û
>W1711071779
LSGX01000106
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGX]
125
200
+
Thr
GGT
[ENA]
¡û
>W1711262033
LYXN01000045
Gammaproteobacteria
Aeromonas hydrophila [LYXN]
141336
141261
-
Thr
GGT
[ENA]
¡û
>W1711262050
LYXN01000106
Gammaproteobacteria
Aeromonas hydrophila [LYXN]
161
236
+
Thr
GGT
[ENA]
¡û
>W1711262136
LYXO01000042
Gammaproteobacteria
Aeromonas piscicola [LYXO]
161
236
+
Thr
GGT
[ENA]
¡û
>W1711262172
LYXO01000070
Gammaproteobacteria
Aeromonas piscicola [LYXO]
130110
130035
-
Thr
GGT
[ENA]
¡û
>W1711263463
LYZH01000010
Gammaproteobacteria
Aeromonas hydrophila [LYZH]
124
199
+
Thr
GGT
[ENA]
¡û
>W1711304554
MAKJ01000056
Gammaproteobacteria
Aeromonas hydrophila [MAKJ]
125
200
+
Thr
GGT
[ENA]
¡û
>W1711304598
MAKJ01000109
Gammaproteobacteria
Aeromonas hydrophila [MAKJ]
36931
36856
-
Thr
GGT
[ENA]
¡û
>W131229086
AUGM01000029
Gammaproteobacteria
Ferrimonas senticii DSM 18821 [AUGM]
18714
18639
-
Thr
GGT
[ENA]
¡û
>W131229088
AUGM01000032
Gammaproteobacteria
Ferrimonas senticii DSM 18821 [AUGM]
226
301
+
Thr
GGT
[ENA]
¡û
>W131229092
AUGM01000033
Gammaproteobacteria
Ferrimonas senticii DSM 18821 [AUGM]
361
286
-
Thr
GGT
[ENA]
¡û
>W1711429535
MIIQ01000014
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIQ]
379
454
+
Thr
GGT
[ENA]
¡û
>W1711429559
MIIQ01000028
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIQ]
382
457
+
Thr
GGT
[ENA]
¡û
>W1711429962
MIIU01000047
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIU]
405
480
+
Thr
GGT
[ENA]
¡û
>W1711429984
MIIU01000058
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIU]
403
478
+
Thr
GGT
[ENA]
¡û
>W1711660847
MQSY01000058
Gammaproteobacteria
Aeromonas sp. YN13HZO-058 [MQSY]
10012
9937
-
Thr
GGT
[ENA]
¡û
>W1711667131
MRDF01000016
Gammaproteobacteria
Aeromonas hydrophila [MRDF]
181
256
+
Thr
GGT
[ENA]
¡û
>W1711683959
MRZP01000051
Gammaproteobacteria
Aeromonas allosaccharophila [MRZP]
24882
24807
-
Thr
GGT
[ENA]
¡û
>C171048411
CP016380
Gammaproteobacteria
Aeromonas hydrophila AHNIH1 [CP016380]
4859092
4859017
-
Thr
GGT
-
¡û
>C171048414
CP016380
Gammaproteobacteria
Aeromonas hydrophila AHNIH1 [CP016380]
4724896
4724821
-
Thr
GGT
-
¡û
>C171075066
CP018201
Gammaproteobacteria
Aeromonas hydrophila MX16A [CP018201]
48575
48650
+
Thr
GGT
-
¡û
>W131044030
AMQG01000022
Gammaproteobacteria
Aeromonas salmonicida subsp. achromogenes AS03 [AMQG]
37489
37414
-
Thr
GGT
[ENA]
¡û
>W131044075
AMQG01000098
Gammaproteobacteria
Aeromonas salmonicida subsp. achromogenes AS03 [AMQG]
129
204
+
Thr
GGT
[ENA]
¡û
>C000623
CP000462
Gammaproteobacteria
Aeromonas hydrophila subsp. hydrophila ATCC 7966 [CP000462]
90487
90562
+
Thr
GGT
[Ensembl]
¡û
>C000627
CP000462
Gammaproteobacteria
Aeromonas hydrophila subsp. hydrophila ATCC 7966 [CP000462]
220152
220227
+
Thr
GGT
[Ensembl]
¡û
>WENV181195527
OEQT01001617
[OEQT] metagenome; water of meat washing
162
237
+
Thr
GGT
[ENA]
¢þ
>WENV181200409
OERK01005232
[OERK] metagenome; water of meat washing
162
237
+
Thr
GGT
[ENA]
¢þ
>WENV182540720
OJAP01000752
[OJAP] seawater metagenome; Sea water
737
662
-
Thr
GGT
[ENA]
¢þ
>WENV182542308
OJAY01000037
[OJAY] seawater metagenome; Sea water
81895
81970
+
Thr
GGT
[ENA]
¢þ
>WENV182544074
OJBE01000187
[OJBE] seawater metagenome; Sea water
448
373
-
Thr
GGT
[ENA]
¢þ
>WENV182544556
OJBH01000113
[OJBH] seawater metagenome; Sea water
63
138
+
Thr
GGT
[ENA]
¢þ
>WENV182547016
OJBR01000137
[OJBR] seawater metagenome; Sea water
448
373
-
Thr
GGT
[ENA]
¢þ
>WENV182556022
OJDF01004141
[OJDF] seawater metagenome; Sea water
257
332
+
Thr
GGT
[ENA]
¢þ
>WENV182559538
OJDQ01000087
[OJDQ] seawater metagenome; Sea water
46715
46790
+
Thr
GGT
[ENA]
¢þ
>WENV182566749
OJEM01002147
[OJEM] seawater metagenome; Sea water
2696
2771
+
Thr
GGT
[ENA]
¢þ
>WENV183055175
OLGX01000054
[OLGX] seawater metagenome; Sea water
81895
81970
+
Thr
GGT
[ENA]
¢þ
>WENV183057370
OLHL01000824
[OLHL] seawater metagenome; Sea water
12764
12839
+
Thr
GGT
[ENA]
¢þ
>WENV183059592
OLHV01000034
[OLHV] seawater metagenome; Sea water
98669
98744
+
Thr
GGT
[ENA]
¢þ
>WENV170016526
AZIK01011586
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
198
123
-
Thr
GGT
[ENA]
¢þ
>WENV170927596
MDTG01119787
[MDTG] marine metagenome; seawater
8991
9066
+
Thr
GGT
[ENA]
¢þ
>C181060044
CP022175
Gammaproteobacteria
Aeromonas salmonicida S121 [CP022175]
135031
135106
+
Thr
GGT
-
¡û
>C181060102
CP022175
Gammaproteobacteria
Aeromonas salmonicida S121 [CP022175]
4655225
4655150
-
Thr
GGT
-
¡û
>C181060282
CP022186
Gammaproteobacteria
Aeromonas salmonicida S68 [CP022186]
135032
135107
+
Thr
GGT
-
¡û
>C181060340
CP022186
Gammaproteobacteria
Aeromonas salmonicida S68 [CP022186]
4662061
4661986
-
Thr
GGT
-
¡û
>C181064574
CP022426
Gammaproteobacteria
Aeromonas salmonicida subsp. pectinolytica 34mel [CP022426]
126288
126363
+
Thr
GGT
-
¡û
>C181064643
CP022426
Gammaproteobacteria
Aeromonas salmonicida subsp. pectinolytica 34mel [CP022426]
4893315
4893240
-
Thr
GGT
-
¡û
>C181091076
CP023818
Gammaproteobacteria
Aeromonas sp. CA23 [CP023818]
1048305
1048380
+
Thr
GGT
-
¡û
>C181091186
CP023818
Gammaproteobacteria
Aeromonas sp. CA23 [CP023818]
858162
858087
-
Thr
GGT
-
¡û
>C181129264
CP026217
Gammaproteobacteria
Aeromonas sp. ASNIH4 [CP026217]
5028890
5028965
+
Thr
GGT
-
¡û
>C181129269
CP026217
Gammaproteobacteria
Aeromonas sp. ASNIH4 [CP026217]
4804829
4804754
-
Thr
GGT
-
¡û
>C181160116
CP027804
Gammaproteobacteria
Aeromonas hydrophila KN-Mc-1R2 [CP027804]
4854743
4854818
+
Thr
GGT
-
¡û
>C181160123
CP027804
Gammaproteobacteria
Aeromonas hydrophila KN-Mc-1R2 [CP027804]
4677895
4677820
-
Thr
GGT
-
¡û
>C181160613
CP027856
Gammaproteobacteria
Aeromonas rivipollensis KN-Mc-11N1 [CP027856]
880840
880915
+
Thr
GGT
-
¡û
>C181160706
CP027856
Gammaproteobacteria
Aeromonas rivipollensis KN-Mc-11N1 [CP027856]
717192
717117
-
Thr
GGT
-
¡û
>C181167000
CP028568
Gammaproteobacteria
Aeromonas hydrophila subsp. hydrophila WCHAH045096 [CP028568]
4975566
4975491
-
Thr
GGT
-
¡û
>C181167004
CP028568
Gammaproteobacteria
Aeromonas hydrophila subsp. hydrophila WCHAH045096 [CP028568]
4846839
4846764
-
Thr
GGT
-
¡û
>C191057412
CP028418
Gammaproteobacteria
Aeromonas hydrophila WCX23 [CP028418]
497310
497385
+
Thr
GGT
-
¡û
>C191057416
CP028418
Gammaproteobacteria
Aeromonas hydrophila WCX23 [CP028418]
627962
628037
+
Thr
GGT
-
¡û
>C191160036
CP038463
Gammaproteobacteria
Aeromonas hydrophila WCX23 [CP038463]
5098763
5098688
-
Thr
GGT
-
¡û
>C191160040
CP038463
Gammaproteobacteria
Aeromonas hydrophila WCX23 [CP038463]
4968112
4968037
-
Thr
GGT
-
¡û
>W141810710
JPWL01000011
Gammaproteobacteria
Aeromonas bestiarum salmonicida [JPWL]
72537
72612
+
Thr
GGT
[ENA]
¡û
>W141810757
JPWL01000036
Gammaproteobacteria
Aeromonas bestiarum salmonicida [JPWL]
28176
28101
-
Thr
GGT
[ENA]
¡û
>W141822906
JRBF01000060
Gammaproteobacteria
Aeromonas media [JRBF]
50049
49974
-
Thr
GGT
[ENA]
¡û
>C141004962
CP006579
Gammaproteobacteria
Aeromonas hydrophila 4AK4 [CP006579]
130713
130788
+
Thr
GGT
[Ensembl]
¡û
>C141005005
CP006579
Gammaproteobacteria
Aeromonas hydrophila 4AK4 [CP006579]
4480742
4480667
-
Thr
GGT
[Ensembl]
¡û
>W1910619994
LJZX01000043
Gammaproteobacteria
Aeromonas sobria JF2635 [LJZX]
64861
64786
-
Thr
GGT
[ENA]
¡û
>W1910619998
LJZX01000049
Gammaproteobacteria
Aeromonas sobria JF2635 [LJZX]
32229
32154
-
Thr
GGT
[ENA]
¡û
>W1910634891
LMTT01000021
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida M22710-11 [LMTT]
360
435
+
Thr
GGT
[ENA]
¡û
>W1910634920
LMTT01000033
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida M22710-11 [LMTT]
366
441
+
Thr
GGT
[ENA]
¡û
>W1910635536
LNGB01000014
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida m11743-09 [LNGB]
695
770
+
Thr
GGT
[ENA]
¡û
>W1910635573
LNGB01000036
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida m11743-09 [LNGB]
670
745
+
Thr
GGT
[ENA]
¡û
>W1911420392
NXBQ01000013
Gammaproteobacteria
Aeromonas bivalvium ZJ19-2 [NXBQ]
149613
149538
-
Thr
GGT
[ENA]
¡û
>W1911420412
NXBQ01000021
Gammaproteobacteria
Aeromonas bivalvium ZJ19-2 [NXBQ]
33220
33145
-
Thr
GGT
[ENA]
¡û
>W1911420540
NXBS01000008
Gammaproteobacteria
Aeromonas allosaccharophila Z9-6 [NXBS]
237
312
+
Thr
GGT
[ENA]
¡û
>W1911420571
NXBS01000028
Gammaproteobacteria
Aeromonas allosaccharophila Z9-6 [NXBS]
46347
46272
-
Thr
GGT
[ENA]
¡û
>W1911420645
NXBT01000016
Gammaproteobacteria
Aeromonas salmonicida Z5-5 [NXBT]
96213
96138
-
Thr
GGT
[ENA]
¡û
>W1911420657
NXBT01000025
Gammaproteobacteria
Aeromonas salmonicida Z5-5 [NXBT]
2
77
+
Thr
GGT
[ENA]
¡û
>W1911621108
PQLM01000062
Gammaproteobacteria
Aeromonas sp. ASNIH6 [PQLM]
233
308
+
Thr
GGT
[ENA]
¡û
>W1911621110
PQLM01000077
Gammaproteobacteria
Aeromonas sp. ASNIH6 [PQLM]
233
308
+
Thr
GGT
[ENA]
¡û
>W1810259652
PQLL01000048
Gammaproteobacteria
Aeromonas hydrophila AHNIH2 [PQLL]
233
308
+
Thr
GGT
[ENA]
¡û
>W1810259657
PQLL01000061
Gammaproteobacteria
Aeromonas hydrophila AHNIH2 [PQLL]
233
308
+
Thr
GGT
[ENA]
¡û
>W1810338574
PUTQ01000029
Gammaproteobacteria
Aeromonas hydrophila AFG_SD03_1510_Ahy_093 [PUTQ]
183
258
+
Thr
GGT
[ENA]
¡û
>C151013106
CP006829
Gammaproteobacteria
Thalassolituus oleivorans R6-15 [CP006829]
3498748
3498673
-
Thr
GGT
[Ensembl]
¡û
>C151013585
CP006870
Gammaproteobacteria
Aeromonas hydrophila NJ-35 [CP006870]
5078319
5078244
-
Thr
GGT
[Ensembl]
¡û
>C151013999
CP006883
Gammaproteobacteria
Aeromonas hydrophila J-1 [CP006883]
4953832
4953757
-
Thr
GGT
[Ensembl]
¡û
>C151028258
CP007567
Gammaproteobacteria
Aeromonas media WS [CP007567]
4233450
4233525
+
Thr
GGT
[Ensembl]
¡û
>C151028260
CP007567
Gammaproteobacteria
Aeromonas media WS [CP007567]
4361688
4361763
+
Thr
GGT
[Ensembl]
¡û
>C151028721
CP007576
Gammaproteobacteria
Aeromonas hydrophila pc104A [CP007576]
111436
111511
+
Thr
GGT
[Ensembl]
¡û
>C151074429
CP010947
Gammaproteobacteria
Aeromonas hydrophila AL06-06 [CP010947]
125288
125363
+
Thr
GGT
[Ensembl]
¡û
>C151074433
CP010947
Gammaproteobacteria
Aeromonas hydrophila AL06-06 [CP010947]
256119
256194
+
Thr
GGT
[Ensembl]
¡û
>W1510067414
CDDA01000007
Gammaproteobacteria
Aeromonas bestiarum CECT 4227 [CDDA]
92163
92088
-
Thr
GGT
[ENA]
¡û
>W1510067472
CDDA01000033
Gammaproteobacteria
Aeromonas bestiarum CECT 4227 [CDDA]
66230
66155
-
Thr
GGT
[ENA]
¡û
>W1511345488
JRGL01000115
Gammaproteobacteria
Aeromonas aquatica AE235 [JRGL]
116
191
+
Thr
GGT
[ENA]
¡û
>W1511359831
JRYV01000115
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida 2009-144K3 [JRYV]
119060
118985
-
Thr
GGT
[ENA]
¡û
>W1511359832
JRYV01000128
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida 2009-144K3 [JRYV]
683
758
+
Thr
GGT
[ENA]
¡û
>C161052461
CP013178
Gammaproteobacteria
Aeromonas hydrophila JBN2301 [CP013178]
5080343
5080268
-
Thr
GGT
[Ensembl]
¡û
>W121021223
AGVO01000079
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida 01-B526 [AGVO]
99309
99234
-
Thr
GGT
[ENA]
¡û
>W121021228
AGVO01000088
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida 01-B526 [AGVO]
72764
72689
-
Thr
GGT
[ENA]
¡û
>W1610551046
JYFF01000012
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [JYFF]
118658
118583
-
Thr
GGT
[ENA]
¡û
>W1610551083
JYFF01000038
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [JYFF]
383
458
+
Thr
GGT
[ENA]
¡û
>W1610574829
JZTF01000020
Gammaproteobacteria
Aeromonas salmonicida [JZTF]
89537
89462
-
Thr
GGT
[ENA]
¡û
>W1610574839
JZTF01000024
Gammaproteobacteria
Aeromonas salmonicida [JZTF]
221
296
+
Thr
GGT
[ENA]
¡û
>W1610892140
LRRV01000011
Gammaproteobacteria
Aeromonas hydrophila [LRRV]
72583
72508
-
Thr
GGT
[ENA]
¡û
>W1610892235
LRRW01000011
Gammaproteobacteria
Aeromonas hydrophila [LRRW]
337
412
+
Thr
GGT
[ENA]
¡û
>W1610892422
LRRY01000015
Gammaproteobacteria
Aeromonas hydrophila [LRRY]
72698
72623
-
Thr
GGT
[ENA]
¡û
>W1610910955
LSGX01000001
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGX]
125
200
+
Thr
GGT
[ENA]
¡û
>W1610911039
LSGX01000106
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGX]
125
200
+
Thr
GGT
[ENA]
¡û
>W1611023956
LYXN01000045
Gammaproteobacteria
Aeromonas hydrophila [LYXN]
141336
141261
-
Thr
GGT
[ENA]
¡û
>W1611023973
LYXN01000106
Gammaproteobacteria
Aeromonas hydrophila [LYXN]
161
236
+
Thr
GGT
[ENA]
¡û
>W1611024059
LYXO01000042
Gammaproteobacteria
Aeromonas piscicola [LYXO]
161
236
+
Thr
GGT
[ENA]
¡û
>W1611024095
LYXO01000070
Gammaproteobacteria
Aeromonas piscicola [LYXO]
130110
130035
-
Thr
GGT
[ENA]
¡û
>W1710595859
FTME01000009
Gammaproteobacteria
Aeromonas hydrophila [FTME]
128873
128798
-
Thr
GGT
[ENA]
¡û
>W1710595863
FTME01000012
Gammaproteobacteria
Aeromonas hydrophila [FTME]
285
360
+
Thr
GGT
[ENA]
¡û
>W1710597573
FTNG01000010
Gammaproteobacteria
Aeromonas hydrophila RU34C [FTNG]
128828
128753
-
Thr
GGT
[ENA]
¡û
>W1710597580
FTNG01000014
Gammaproteobacteria
Aeromonas hydrophila RU34C [FTNG]
285
360
+
Thr
GGT
[ENA]
¡û
>W1710661319
JYFF01000012
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [JYFF]
118658
118583
-
Thr
GGT
[ENA]
¡û
>W1710661356
JYFF01000038
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [JYFF]
383
458
+
Thr
GGT
[ENA]
¡û
>W1710692064
JZTF01000020
Gammaproteobacteria
Aeromonas salmonicida [JZTF]
89537
89462
-
Thr
GGT
[ENA]
¡û
>W1710692074
JZTF01000024
Gammaproteobacteria
Aeromonas salmonicida [JZTF]
221
296
+
Thr
GGT
[ENA]
¡û
>W1710694463
LAIS01000539
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LAIS]
6196
6121
-
Thr
GGT
[ENA]
¡û
>W1710694464
LAIS01000573
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LAIS]
457
532
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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