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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29670 (55 seq.)
>W1710864811
LMGE01000001
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
60697
60608
-
Ser
TGA
[ENA]
¡û
>W1710865497
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
1371365
1371276
-
Ser
TGA
[ENA]
¡û
>W1710866093
LMHF01000002
Gammaproteobacteria
Lysobacter sp. Root667 [LMHF]
62360
62271
-
Ser
TGA
[ENA]
¡û
>W1710866468
LMHM01000011
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
109605
109516
-
Ser
TGA
[ENA]
¡û
>W1710867589
LMIK01000001
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
169369
169280
-
Ser
TGA
[ENA]
¡û
>W1710868614
LMJF01000001
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
1383527
1383438
-
Ser
TGA
[ENA]
¡û
>W1710868958
LMJN01000002
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
656140
656051
-
Ser
TGA
[ENA]
¡û
>W1710869001
LMJO01000001
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
768682
768593
-
Ser
TGA
[ENA]
¡û
>W131226662
AUEN01000008
Gammaproteobacteria
Lysobacter sp. URHA0019 [AUEN]
87588
87677
+
Ser
TGA
[ENA]
¡û
>W131244861
CAQP01000025
Gammaproteobacteria
Lysobacter antibioticus HS124 [CAQP]
4729
4818
+
Ser
TGA
[ENA]
¡û
>W1711711478
MTAY01000005
Gammaproteobacteria
Lysobacter enzymogenes [MTAY]
117010
116921
-
Ser
TGA
[ENA]
¡û
>W141094339
AVCK01000012
Gammaproteobacteria
Arenimonas metalli CF5-1 [AVCK]
192243
192332
+
Ser
TGA
[ENA]
¡û
>W141149633
AWZR01000012
Gammaproteobacteria
Luteimonas sp. J29 [AWZR]
70993
70904
-
Ser
TGA
[ENA]
¡û
>W141282815
JAJA01000003
Gammaproteobacteria
Lysobacter capsici AZ78 [JAJA]
306233
306144
-
Ser
TGA
[ENA]
¡û
>WENV182941862
OKVG01011478
[OKVG] human gut metagenome; human gut
1309
1398
+
Ser
TGA
[ENA]
¢þ
>WENV170018763
BBPD01000769
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
49442
49353
-
Ser
TGA
[ENA]
¢þ
>WENV170019680
BBPE01000038
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2616
2705
+
Ser
TGA
[ENA]
¢þ
>WENV170712011
LNFM01009076
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
6522
6433
-
Ser
TGA
[ENA]
¢þ
>C181001014
AP014940
Gammaproteobacteria
Lysobacter enzymogenes M497-1 [AP014940]
2422158
2422247
+
Ser
TGA
-
¡û
>C181021693
CP016836
Gammaproteobacteria
Xanthomonas citri pv. mangiferaeindicae XC01 [CP016836]
3249938
3250027
+
Ser
TGA
-
¡û
>C181080826
CP023406
Gammaproteobacteria
Luteimonas chenhongjianii 100111 [CP023406]
2005821
2005910
+
Ser
TGA
-
¡û
>C181081808
CP023465
Gammaproteobacteria
Lysobacter capsici KNU-14 [CP023465]
2466328
2466417
+
Ser
TGA
-
¡û
>C181200050
CP031413
Gammaproteobacteria
Lysobacter sp. TY2-98 [CP031413]
1023223
1023312
+
Ser
TGA
-
¡û
>C191139368
CP035376
Gammaproteobacteria
Luteimonas sp. YGD11-2 [CP035376]
1507936
1508025
+
Ser
TGA
-
¡û
>C191165673
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
1480669
1480758
+
Ser
TGA
-
¡û
>C191181076
CP040656
Gammaproteobacteria
Lysobacter enzymogenes YC36 [CP040656]
3547552
3547463
-
Ser
TGA
-
¡û
>W141713905
JMTZ01000022
Gammaproteobacteria
Lysobacter antibioticus [JMTZ]
80338
80249
-
Ser
TGA
[ENA]
¡û
>W1911162551
NPZB01000002
Gammaproteobacteria
Lysobacter silvestris AM20-91 [NPZB]
582047
581958
-
Ser
TGA
[ENA]
¡û
>W1911218331
NRQR01000002
Gammaproteobacteria
Luteimonas sp. 4-12 [NRQR]
81974
81885
-
Ser
TGA
[ENA]
¡û
>W1911283664
NTJF01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0831 [NTJF]
444080
444169
+
Ser
TGA
[ENA]
¡û
>W1911283730
NTJG01000006
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0793 [NTJG]
182692
182781
+
Ser
TGA
[ENA]
¡û
>W1911283793
NTJH01000015
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0792 [NTJH]
72726
72637
-
Ser
TGA
[ENA]
¡û
>W1911283827
NTJI01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0399 [NTJI]
98386
98297
-
Ser
TGA
[ENA]
¡û
>W1911405228
NWQL01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
543051
542962
-
Ser
TGA
[ENA]
¡û
>W1911770895
QXJI01000001
Gammaproteobacteria
Lysobacter tabacisoli C8-1 [QXJI]
898279
898190
-
Ser
TGA
[ENA]
¡û
>W1810858429
QTJR01000003
Gammaproteobacteria
Lysobacter soli KCTC 22011 [QTJR]
132784
132695
-
Ser
TGA
[ENA]
¡û
>W1810860380
QTSU01000001
Gammaproteobacteria
Lysobacter silvisoli zong2l5 [QTSU]
1412649
1412560
-
Ser
TGA
[ENA]
¡û
>W1511582539
LASZ01000001
Gammaproteobacteria
Luteimonas sp. FCS-9 [LASZ]
179932
179843
-
Ser
TGA
[ENA]
¡û
>W1511595014
LBMI01000004
Gammaproteobacteria
Lysobacter capsici X2-3 [LBMI]
724381
724470
+
Ser
TGA
[ENA]
¡û
>C161031556
CP011129
Gammaproteobacteria
Lysobacter antibioticus 76 [CP011129]
2563275
2563364
+
Ser
TGA
[Ensembl]
¡û
>C161031606
CP011130
Gammaproteobacteria
Lysobacter capsici 55 [CP011130]
2481384
2481473
+
Ser
TGA
[Ensembl]
¡û
>C161031671
CP011131
Gammaproteobacteria
Lysobacter gummosus 3.2.11 [CP011131]
3318777
3318688
-
Ser
TGA
[Ensembl]
¡û
>C161052059
CP013140
Gammaproteobacteria
Lysobacter enzymogenes C3 [CP013140]
3351873
3351784
-
Ser
TGA
[Ensembl]
¡û
>C161052090
CP013141
Gammaproteobacteria
Lysobacter antibioticus ATCC 29479 [CP013141]
5244086
5243997
-
Ser
TGA
-
¡û
>W1610727157
LMGE01000001
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
60697
60608
-
Ser
TGA
[ENA]
¡û
>W1610727843
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
1371365
1371276
-
Ser
TGA
[ENA]
¡û
>W1610728439
LMHF01000002
Gammaproteobacteria
Lysobacter sp. Root667 [LMHF]
62360
62271
-
Ser
TGA
[ENA]
¡û
>W1610728814
LMHM01000011
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
109605
109516
-
Ser
TGA
[ENA]
¡û
>W1610729935
LMIK01000001
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
169369
169280
-
Ser
TGA
[ENA]
¡û
>W1610730960
LMJF01000001
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
1383527
1383438
-
Ser
TGA
[ENA]
¡û
>W1610731304
LMJN01000002
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
656140
656051
-
Ser
TGA
[ENA]
¡û
>W1610731347
LMJO01000001
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
768682
768593
-
Ser
TGA
[ENA]
¡û
>W1710529746
FNOG01000003
Gammaproteobacteria
Lysobacter enzymogenes [FNOG]
306244
306333
+
Ser
TGA
[ENA]
¡û
>W1710531717
FNPT01000001
Gammaproteobacteria
Lysobacter sp. yr284 [FNPT]
463807
463718
-
Ser
TGA
[ENA]
¡û
>W1710567415
FOSS01000003
Gammaproteobacteria
Lysobacter sp. cf310 [FOSS]
442718
442629
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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