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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29675 (22 seq.)
>W1710871442
LMLI01000001
Gammaproteobacteria
Serratia sp. Leaf50 [LMLI]
401908
401819
-
Ser
GGA
[ENA]
¡û
>W1710871443
LMLI01000001
Gammaproteobacteria
Serratia sp. Leaf50 [LMLI]
401575
401486
-
Ser
GGA
[ENA]
¡û
>W1711680180
MRWD01000010
Gammaproteobacteria
Rouxiella silvae [MRWD]
49064
48975
-
Ser
GGA
[ENA]
¡û
>W1711680181
MRWD01000010
Gammaproteobacteria
Rouxiella silvae [MRWD]
48731
48642
-
Ser
GGA
[ENA]
¡û
>WENV183521762
OMNU01025923
[OMNU] human gut metagenome; feces
878
789
-
Ser
GGA
[ENA]
¢þ
>C191008134
CP004083
Gammaproteobacteria
Enterobacteriaceae bacterium bta3-1 [CP004083]
1113549
1113460
-
Ser
GGA
-
¡û
>C191152040
CP036514
Gammaproteobacteria
Hafnia alvei PCM_1220 [CP036514]
1975690
1975601
-
Ser
GGA
-
¡û
>C191152041
CP036514
Gammaproteobacteria
Hafnia alvei PCM_1220 [CP036514]
1974867
1974778
-
Ser
GGA
-
¡û
>W141710462
JMPJ01000084
Gammaproteobacteria
Ewingella americana ATCC 33852 [JMPJ]
196
107
-
Ser
GGA
[ENA]
¡û
>W1910649360
LXYV01000786
Gammaproteobacteria
Ewingella americana BRK18a [LXYV]
191641
191730
+
Ser
GGA
[ENA]
¡û
>W1910649361
LXYV01000786
Gammaproteobacteria
Ewingella americana BRK18a [LXYV]
192160
192249
+
Ser
GGA
[ENA]
¡û
>SRA1013587
SRR023396.251213
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
127
36
-
Ser
GGA
[SRA]
>W1511399591
JTEU02000003
Gammaproteobacteria
Hafnia alvei DSM 30099 [JTEU]
123720
123631
-
Ser
GGA
[ENA]
¡û
>W1511399592
JTEU02000003
Gammaproteobacteria
Hafnia alvei DSM 30099 [JTEU]
122887
122798
-
Ser
GGA
[ENA]
¡û
>C161065237
CP014031
Gammaproteobacteria
Hafnia paralvei FDAARGOS_158 [CP014031]
3607490
3607579
+
Ser
GGA
-
¡û
>C161065238
CP014031
Gammaproteobacteria
Hafnia paralvei FDAARGOS_158 [CP014031]
3608324
3608413
+
Ser
GGA
-
¡û
>W121008382
AGCI01000010
Gammaproteobacteria
Hafnia alvei ATCC 51873 [AGCI]
199138
199227
+
Ser
GGA
[ENA]
¡û
>W121008383
AGCI01000010
Gammaproteobacteria
Hafnia alvei ATCC 51873 [AGCI]
199971
200060
+
Ser
GGA
[ENA]
¡û
>W1610733788
LMLI01000001
Gammaproteobacteria
Serratia sp. Leaf50 [LMLI]
401908
401819
-
Ser
GGA
[ENA]
¡û
>W1610733789
LMLI01000001
Gammaproteobacteria
Serratia sp. Leaf50 [LMLI]
401575
401486
-
Ser
GGA
[ENA]
¡û
>W1610994664
LXET01000041
Gammaproteobacteria
Hafnia paralvei ATCC 29927 [LXET]
162315
162404
+
Ser
GGA
[ENA]
¡û
>W1610994665
LXET01000041
Gammaproteobacteria
Hafnia paralvei ATCC 29927 [LXET]
163162
163251
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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