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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.296875 (25 seq.)
>C171037028
CP015211
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-13 [CP015210, CP015211]
431041
431116
+
Ala
CGC
-
¡û
>W131058637
ANFS01000008
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
4540
4615
+
Ala
CGC
[ENA]
¡û
>C019268
CP000661
Alphaproteobacteria
Cereibacter sphaeroides [CP000661]
1355467
1355542
+
Ala
CGC
[Ensembl]
¡û
>C019336
CP000578
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [CP000577, CP000578]
20991
21066
+
Ala
CGC
[Ensembl]
¡û
>WENV180232951
OBCP01000041
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
275538
275463
-
Ala
CGC
[ENA]
¢þ
>WENV180395778
OBPT01132275
[OBPT] marine metagenome; ENVO:00002010 seawater
110
185
+
Ala
CGC
[ENA]
¢þ
>WENV180569347
OCLR01000030
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
275537
275462
-
Ala
CGC
[ENA]
¢þ
>W141055090
AOLV01000010
Alphaproteobacteria
Rubellimicrobium thermophilum DSM 16684 [AOLV]
261486
261561
+
Ala
CGC
[ENA]
¡û
>WENV180570291
OCLS01000031
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
275538
275463
-
Ala
CGC
[ENA]
¢þ
>WENV180571312
OCLT01000043
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
275538
275463
-
Ala
CGC
[ENA]
¢þ
>WENV180639626
OCRL01000045
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
275538
275463
-
Ala
CGC
[ENA]
¢þ
>WENV180640553
OCRM01000041
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
275537
275462
-
Ala
CGC
[ENA]
¢þ
>C181191145
CP030272
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]
430976
431051
+
Ala
CGC
-
¡û
>C191151048
CP036420
Alphaproteobacteria
Cereibacter sphaeroides HJ [CP036419, CP036420]
189912
189837
-
Ala
CGC
-
¡û
>W09104714
AAME01000006
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17025 [AAME]
123045
123120
+
Ala
CGC
[ENA]
¡û
>W09104795
AAMF01000012
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
98914
98989
+
Ala
CGC
[ENA]
¡û
>W141812227
JQAJ01000001
Alphaproteobacteria
Candidatus Hepatobacter penaei [JQAJ]
126378
126453
+
Ala
CGC
[ENA]
¡û
>W1911491929
OAOQ01000011
Alphaproteobacteria
Cereibacter ovatus JA234 [OAOQ]
4916
4991
+
Ala
CGC
[ENA]
¡û
>W1911749447
QWGP01000008
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
148122
148047
-
Ala
CGC
[ENA]
¡û
>W1810119937
PHSI01000017
Alphaproteobacteria
Cereibacter azotoformans YLK20 [PHSI]
25845
25770
-
Ala
CGC
[ENA]
¡û
>W1810463840
PZZW01000004
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
380951
381026
+
Ala
CGC
[ENA]
¡û
>W1810699107
QMCC01000005
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
176935
176860
-
Ala
CGC
[ENA]
¡û
>W11160208
AFER01000002
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
653272
653347
+
Ala
CGC
[ENA]
¡û
>C161048388
CP012961
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-8 [CP012960, CP012961]
430980
431055
+
Ala
CGC
-
¡û
>W121076816
AKBU01000002
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKBU]
567286
567361
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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