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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29692 (41 seq.)
>W1710906980
LNOL01000016
Betaproteobacteria
Alcaligenes faecalis [LNOL]
21636
21725
+
Ser
CGA
[ENA]
¡û
>W1710995929
LQAS01000002
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
239351
239262
-
Ser
CGA
[ENA]
¡û
>W1711710482
MSZN01000001
Betaproteobacteria
Alcaligenes faecalis [MSZN]
132455
132366
-
Ser
CGA
[ENA]
¡û
>W1711710531
MSZO01000002
Betaproteobacteria
Alcaligenes faecalis [MSZO]
260055
260144
+
Ser
CGA
[ENA]
¡û
>W1711710627
MSZP01000011
Betaproteobacteria
Alcaligenes faecalis [MSZP]
132289
132200
-
Ser
CGA
[ENA]
¡û
>W1711710664
MSZQ01000011
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
8254
8343
+
Ser
CGA
[ENA]
¡û
>W1711710713
MSZR01000013
Betaproteobacteria
Alcaligenes faecalis [MSZR]
8313
8402
+
Ser
CGA
[ENA]
¡û
>W1711711862
MTBI01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
273068
273157
+
Ser
CGA
[ENA]
¡û
>C171115525
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
2812608
2812519
-
Ser
CGA
-
¡û
>W131051757
AMXV01000012
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
176287
176198
-
Ser
CGA
[ENA]
¡û
>W131223055
AUBT01000004
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
383795
383706
-
Ser
CGA
[ENA]
¡û
>W141104420
AVOG02000012
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
145552
145463
-
Ser
CGA
[ENA]
¡û
>W141237744
BBJQ01000013
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
21882
21793
-
Ser
CGA
[ENA]
¡û
>WENV183727796
PJTP01000435
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
1869
1958
+
Ser
CGA
[ENA]
¢þ
>WENV183733551
PJTY01004385
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
414
503
+
Ser
CGA
[ENA]
¢þ
>WENV183741128
PJUF01044092
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
290
379
+
Ser
CGA
[ENA]
¢þ
>WENV170645987
JQGF01003650
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
6065
6154
+
Ser
CGA
[ENA]
¢þ
>WENV170655415
JTFN01030019
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
795
706
-
Ser
CGA
[ENA]
¢þ
>WENV170655560
JTFN01045658
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1474
1385
-
Ser
CGA
[ENA]
¢þ
>WENV170656850
JTFO01052153
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
12
101
+
Ser
CGA
[ENA]
¢þ
>WENV170657437
JTFO01151897
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
244
155
-
Ser
CGA
[ENA]
¢þ
>WENV170965930
MTEV01010378
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
982
1071
+
Ser
CGA
[ENA]
¢þ
>C181053244
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
2925885
2925796
-
Ser
CGA
-
¡û
>C181088602
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
2573680
2573591
-
Ser
CGA
-
¡û
>C191085281
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
3156279
3156190
-
Ser
CGA
-
¡û
>C191091182
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
1431958
1431869
-
Ser
CGA
-
¡û
>C191113958
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
3848344
3848255
-
Ser
CGA
-
¡û
>C191149668
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
759446
759357
-
Ser
CGA
-
¡û
>W1910927796
NIQA01000001
Betaproteobacteria
Pusillimonas sp. T2 [NIQA]
223175
223264
+
Ser
CGA
[ENA]
¡û
>W1911178561
NQMK01000004
Betaproteobacteria
Pusillimonas sp. NJUB218 [NQMK]
245141
245052
-
Ser
CGA
[ENA]
¡û
>W1810580269
QETA01000003
Betaproteobacteria
Corticimicrobacter populi 3d-2-2 [QETA]
162022
162111
+
Ser
CGA
[ENA]
¡û
>W1810583868
QEXO01000001
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
258879
258968
+
Ser
CGA
[ENA]
¡û
>W1511321036
JQCV01000006
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
250449
250538
+
Ser
CGA
[ENA]
¡û
>W1511537452
JZBR01000002
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
804143
804054
-
Ser
CGA
[ENA]
¡û
>C161051381
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
804143
804054
-
Ser
CGA
[Ensembl]
¡û
>W1610093583
CYTB01000013
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
43323
43412
+
Ser
CGA
[ENA]
¡û
>W121091199
AKMR01000004
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
135139
135050
-
Ser
CGA
[ENA]
¡û
>W1610765994
LNOL01000016
Betaproteobacteria
Alcaligenes faecalis [LNOL]
21636
21725
+
Ser
CGA
[ENA]
¡û
>W1610850586
LQAS01000002
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
239351
239262
-
Ser
CGA
[ENA]
¡û
>W1610921526
LSUO01000016
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
159427
159516
+
Ser
CGA
[ENA]
¡û
>W1710082537
BDHG01000005
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
243272
243361
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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