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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297043 (50 seq.)
>W1710860018
LMCN01000042
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
294104
294180
+
Met
CAT
[ENA]
¡û
>W1710861259
LMDM01000003
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
173236
173160
-
Met
CAT
[ENA]
¡û
>W1710861552
LMDS01000001
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
327246
327170
-
Met
CAT
[ENA]
¡û
>W1710861880
LMDY01000017
Betaproteobacteria
Methylibium sp. Root1272 [LMDY]
138505
138429
-
Met
CAT
[ENA]
¡û
>W1710866406
LMHL01000004
Betaproteobacteria
Rhizobacter sp. Root16D2 [LMHL]
95654
95578
-
Met
CAT
[ENA]
¡û
>W1710893639
LNEY01000031
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
42418
42342
-
Met
CAT
[ENA]
¡û
>W1711793364
MWLO01000130
Betaproteobacteria
Ideonella sp. A 288 A 288 [MWLO]
26631
26555
-
Met
CAT
[ENA]
¡û
>W1712102975
NIOF01000008
Betaproteobacteria
Roseateles aquatilis [NIOF]
3926
3850
-
Met
CAT
[ENA]
¡û
>C013948
CP000555
Betaproteobacteria
Methylibium petroleiphilum PM1 [CP000555]
583403
583327
-
Met
CAT
[Ensembl]
¡û
>C171035757
CP015118
Betaproteobacteria
Piscinibacter gummiphilus NS21 [CP015118]
5310040
5310116
+
Met
CAT
-
¡û
>WENV180024355
FTIG01221983
[FTIG] metagenome; soil
30
106
+
Met
CAT
[ENA]
¢þ
>WENV180024686
FTII01274914
[FTII] metagenome; soil
215
291
+
Met
CAT
[ENA]
¢þ
>WENV180263554
OBEQ011486425
[OBEQ] groundwater metagenome; groundwater
9752
9676
-
Met
CAT
[ENA]
¢þ
>WENV180270723
OBEQ012198006
[OBEQ] groundwater metagenome; groundwater
1189
1265
+
Met
CAT
[ENA]
¢þ
>WENV180327708
OBKT01403407
[OBKT] soil metagenome; soil
98
174
+
Met
CAT
[ENA]
¢þ
>WENV180692507
OCZS010578576
[OCZS] soil metagenome; soil
220
296
+
Met
CAT
[ENA]
¢þ
>WENV181171290
OEIV010188870
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
539
463
-
Met
CAT
[ENA]
¢þ
>WENV181227331
OFDN01006685
[OFDN] hot springs metagenome; Water
3902
3826
-
Met
CAT
[ENA]
¢þ
>W141207198
AZND01000007
Betaproteobacteria
Methylibium sp. T29 [AZND]
14070
14146
+
Met
CAT
[ENA]
¡û
>W141214236
AZSN01000008
Betaproteobacteria
Methylibium sp. T29-B [AZSN]
42325
42249
-
Met
CAT
[ENA]
¡û
>WENV183724581
PJQE01031190
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
42
118
+
Met
CAT
[ENA]
¢þ
>WENV170551154
CXWJ01000616
[CXWJ] wastewater metagenome; activated sludge
4202
4278
+
Met
CAT
[ENA]
¢þ
>WENV170559582
CXWL01130986
[CXWL] groundwater metagenome; biofilm material
1754
1678
-
Met
CAT
[ENA]
¢þ
>WENV170645718
JPYU01018596
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
150
74
-
Met
CAT
[ENA]
¢þ
>WENV170709628
LNFM01000541
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
161906
161830
-
Met
CAT
[ENA]
¢þ
>WENV170712270
LNFM01011666
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
86
10
-
Met
CAT
[ENA]
¢þ
>C181103501
CP024645
Betaproteobacteria
Piscinibacter gummiphilus NBRC 109400 [CP024645]
5310043
5310119
+
Met
CAT
-
¡û
>C191064749
CP029606
Betaproteobacteria
Methylibium sp. Pch-M [CP029606]
2471361
2471285
-
Met
CAT
-
¡û
>W141807137
JPOE01000005
Betaproteobacteria
Thiomonas sp. FB-Cd [JPOE]
1351557
1351481
-
Met
CAT
[ENA]
¡û
>W09101383
AAEM01000002
Betaproteobacteria
Methylibium petroleiphilum PM1 [AAEM]
483063
482987
-
Met
CAT
[ENA]
¡û
>W1910175604
BJCL01000007
Betaproteobacteria
Rubrivivax pictus W35 [BJCL]
243779
243855
+
Met
CAT
[ENA]
¡û
>W1910700061
MESD01000198
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_69_20 [MESD]
29839
29763
-
Met
CAT
[ENA]
¡û
>SRA1003210
SRR002326.307419
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
7
83
+
Met
CAT
[SRA]
>SRA1003948
SRR002328.56313
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
180
256
+
Met
CAT
[SRA]
>W1810273295
PSNY01000002
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [PSNY]
7664
7588
-
Met
CAT
[ENA]
¡û
>W1810762756
QQAP01000006
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [QQAP]
8022
7946
-
Met
CAT
[ENA]
¡û
>C151081681
CP011371
Betaproteobacteria
Caldimonas brevitalea DSM 7029 [CP011371]
5412919
5412995
+
Met
CAT
[Ensembl]
¡û
>ENV09000386
ABSN01062475
Freshwater sediment metagenome lwFormaldehyde_C1
354
278
-
Met
CAT
[ENA]
¡û
>W1511433147
JUGZ01000018
Betaproteobacteria
Methylibium sp. CF468 [JUGZ]
141924
141848
-
Met
CAT
[ENA]
¡û
>W1511433179
JUHA01000002
Betaproteobacteria
Methylibium sp. YR605 [JUHA]
220662
220586
-
Met
CAT
[ENA]
¡û
>W1511705375
LGRD01000018
Betaproteobacteria
Methylibium sp. NZG [LGRD]
229157
229081
-
Met
CAT
[ENA]
¡û
>W1610070246
BCTC01000031
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
34993
35069
+
Met
CAT
[ENA]
¡û
>W1610722364
LMCN01000042
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
294104
294180
+
Met
CAT
[ENA]
¡û
>W1610723605
LMDM01000003
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
173236
173160
-
Met
CAT
[ENA]
¡û
>W1610723898
LMDS01000001
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
327246
327170
-
Met
CAT
[ENA]
¡û
>W1610724226
LMDY01000017
Betaproteobacteria
Methylibium sp. Root1272 [LMDY]
138505
138429
-
Met
CAT
[ENA]
¡û
>W1610728752
LMHL01000004
Betaproteobacteria
Rhizobacter sp. Root16D2 [LMHL]
95654
95578
-
Met
CAT
[ENA]
¡û
>W1610753905
LNEY01000031
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
42418
42342
-
Met
CAT
[ENA]
¡û
>W1710067619
BCTC01000031
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
34993
35069
+
Met
CAT
[ENA]
¡û
>W1710592643
FRCQ01000003
Betaproteobacteria
Rhizobacter sp. OV335 [FRCQ]
102554
102478
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK