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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297196 (7 seq.)
>WENV182078418
OHFZ01000084
[OHFZ] human gut metagenome; feces
180
108
-
Thr
CGT
[ENA]
¢þ
>WENV182169225
OHMU01000116
[OHMU] human gut metagenome; feces
21388
21460
+
Thr
CGT
[ENA]
¢þ
>WENV182190347
OHOP01017109
[OHOP] human gut metagenome; feces
240
312
+
Thr
CGT
[ENA]
¢þ
>WENV182651709
OJMH01003503
[OJMH] human gut metagenome; feces
6568
6641
+
Thr
CGT
[ENA]
¢þ
>WENV182906207
OKTD01000144
[OKTD] human gut metagenome; feces
12960
13032
+
Thr
CGT
[ENA]
¢þ
>WENV182906904
OKTE01000106
[OKTE] human gut metagenome; feces
21388
21460
+
Thr
CGT
[ENA]
¢þ
>WENV183076520
OLIW01004597
[OLIW] human gut metagenome; feces
2453
2526
+
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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