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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297308 (22 seq.)
>W1711484277
MKCO01000006
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
185277
185352
+
Lys
TTT
[ENA]
¡û
>C171088997
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
694854
694779
-
Lys
TTT
-
¡û
>C171089001
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
694407
694332
-
Lys
TTT
-
¡û
>C171089005
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
693960
693885
-
Lys
TTT
-
¡û
>C171089009
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
693513
693438
-
Lys
TTT
-
¡û
>C171089013
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
693066
692991
-
Lys
TTT
-
¡û
>WENV181213106
OFBU01010176
[OFBU] metagenome; hydrothermal vent
640
715
+
Lys
TTT
[ENA]
¢þ
>WENV182555548
OJDB01004988
[OJDB] seawater metagenome; Sea water
431
506
+
Lys
TTT
[ENA]
¢þ
>WENV182575684
OJFV01011182
[OJFV] seawater metagenome; Sea water
20
95
+
Lys
TTT
[ENA]
¢þ
>WENV182577434
OJGE01015202
[OJGE] seawater metagenome; Sea water
66
141
+
Lys
TTT
[ENA]
¢þ
>WENV182589176
OJHZ01014480
[OJHZ] seawater metagenome; Sea water
452
377
-
Lys
TTT
[ENA]
¢þ
>WENV183060148
OLHW01022101
[OLHW] seawater metagenome; Sea water
218
293
+
Lys
TTT
[ENA]
¢þ
>WENV170012669
ASRN01000202
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
10937
11012
+
Lys
TTT
[ENA]
¢þ
>WENV170012752
ASRO01000048
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
76
1
-
Lys
TTT
[ENA]
¢þ
>WENV170646397
JQGR01001334
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
1342
1417
+
Lys
TTT
[ENA]
¢þ
>WENV170704612
LLEL01009298
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
104
179
+
Lys
TTT
[ENA]
¢þ
>WENV170704902
LLEN01012086
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
240
165
-
Lys
TTT
[ENA]
¢þ
>WENV170780880
MAAB01027501
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
168
93
-
Lys
TTT
[ENA]
¢þ
>WENV170780881
MAAB01027538
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
119
44
-
Lys
TTT
[ENA]
¢þ
>WENV170936247
MDTG01271920
[MDTG] marine metagenome; seawater
4221
4146
-
Lys
TTT
[ENA]
¢þ
>WENV170941784
MDTG01366386
[MDTG] marine metagenome; seawater
2653
2578
-
Lys
TTT
[ENA]
¢þ
>W1810462576
PZYW01000008
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
272
197
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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