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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29743 (75 seq.)
>W1710856788
LLZQ01000001
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
496687
496598
-
Ser
CGA
[ENA]
¡û
>W1710875342
LMOH01000028
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
231622
231711
+
Ser
CGA
[ENA]
¡û
>W1710989594
LPWA01000148
Alphaproteobacteria
Mesorhizobium loti [LPWA]
6926
7015
+
Ser
CGA
[ENA]
¡û
>W1711135131
LUYO01000142
Alphaproteobacteria
Rhodobacterales bacterium Alpha_02 [LUYO]
18521
18432
-
Ser
CGA
[ENA]
¡û
>W1711257266
LYTM01000045
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
82387
82298
-
Ser
CGA
[ENA]
¡û
>W1711257327
LYTP01000001
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
696351
696440
+
Ser
CGA
[ENA]
¡û
>W131229817
AUHB01000007
Alphaproteobacteria
Pleomorphomonas oryzae DSM 16300 [AUHB]
50234
50145
-
Ser
CGA
[ENA]
¡û
>W1711353163
MDDT01000015
Alphaproteobacteria
Mesorhizobium sp. LCM 4576 [MDDT]
24169
24080
-
Ser
CGA
[ENA]
¡û
>W1711353216
MDDU01000007
Alphaproteobacteria
Mesorhizobium sp. LCM 4577 [MDDU]
8352
8263
-
Ser
CGA
[ENA]
¡û
>W1711353688
MDET01000024
Alphaproteobacteria
Pseudaminobacter manganicus [MDET]
23172
23083
-
Ser
CGA
[ENA]
¡û
>W131235082
AULH01000004
Alphaproteobacteria
Pleomorphomonas koreensis DSM 23070 [AULH]
204668
204757
+
Ser
CGA
[ENA]
¡û
>W1711354730
MDFL01000014
Alphaproteobacteria
Mesorhizobium sp. ORS 3428 ORS3428 [MDFL]
179256
179345
+
Ser
CGA
[ENA]
¡û
>W1711384689
MEDI01000129
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
4871
4960
+
Ser
CGA
[ENA]
¡û
>W1711385425
MEEE01000416
Alphaproteobacteria
Mesorhizobium sp. SCN 65-12 [MEEE]
18152
18063
-
Ser
CGA
[ENA]
¡û
>W1711505390
MKVL01000032
Alphaproteobacteria
Mesorhizobium sp. 65-26 [MKVL]
316542
316631
+
Ser
CGA
[ENA]
¡û
>W1711694770
MSIG01000028
Alphaproteobacteria
Mongoliimonas terrestris MIMtkB18 [MSIG]
30023
30112
+
Ser
CGA
[ENA]
¡û
>C171037570
CP015318
Alphaproteobacteria
Mesorhizobium amorphae CCNWGS0123 [CP015318]
505779
505868
+
Ser
CGA
-
¡û
>C171074247
CP018171
Alphaproteobacteria
Aquibium oceanicum B7 [CP018171]
308030
308119
+
Ser
CGA
-
¡û
>W131219405
ATYO01000006
Alphaproteobacteria
Mesorhizobium sp. WSM3224 [ATYO]
297709
297798
+
Ser
CGA
[ENA]
¡û
>WENV180020368
FTCZ01002131
[FTCZ] metagenome; soil
2475
2564
+
Ser
CGA
[ENA]
¢þ
>WENV180026783
FTIU01140707
[FTIU] metagenome; soil
82
171
+
Ser
CGA
[ENA]
¢þ
>WENV181166957
OEIU01004874
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
5096
5007
-
Ser
CGA
[ENA]
¢þ
>WENV181308261
OFIS01001688
[OFIS] sludge metagenome; sludge
3288
3199
-
Ser
CGA
[ENA]
¢þ
>WENV181401921
OFTX01023184
[OFTX] sludge metagenome; sludge
325
236
-
Ser
CGA
[ENA]
¢þ
>WENV181402335
OFTY01000664
[OFTY] sludge metagenome; sludge
784
695
-
Ser
CGA
[ENA]
¢þ
>W141266701
CCMY01000206
Alphaproteobacteria
Mesorhizobium sp. ORS 3324 ORS3324 [CCMY]
16175
16264
+
Ser
CGA
[ENA]
¡û
>W141266731
CCMZ01000034
Alphaproteobacteria
Mesorhizobium plurifarium [CCMZ]
245402
245313
-
Ser
CGA
[ENA]
¡û
>W141266797
CCNA01000061
Alphaproteobacteria
Mesorhizobium sp. SOD10 [CCNA]
88004
87915
-
Ser
CGA
[ENA]
¡û
>W141266843
CCNB01000046
Alphaproteobacteria
Mesorhizobium plurifarium [CCNB]
157471
157382
-
Ser
CGA
[ENA]
¡û
>W141266883
CCNC01000168
Alphaproteobacteria
Mesorhizobium sp. ORS 3359 ORS3359 [CCNC]
29877
29788
-
Ser
CGA
[ENA]
¡û
>W141266910
CCNE01000021
Alphaproteobacteria
Mesorhizobium plurifarium [CCNE]
8982
8893
-
Ser
CGA
[ENA]
¡û
>W141277520
JAEQ01000023
Alphaproteobacteria
Chelativorans sp. J32 [JAEQ]
67828
67917
+
Ser
CGA
[ENA]
¡û
>WENV183685325
ORMF010831585
[ORMF] groundwater metagenome; groundwater
323
412
+
Ser
CGA
[ENA]
¢þ
>WENV170561602
CZCA01015905
[CZCA] anaerobic digester metagenome; anaerobic digester
948
1037
+
Ser
CGA
[ENA]
¢þ
>WENV170962012
MRWF01002060
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
205
294
+
Ser
CGA
[ENA]
¢þ
>WENV170962801
MRWF01027307
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
2364
2453
+
Ser
CGA
[ENA]
¢þ
>C191000407
AP017626
Alphaproteobacteria
Pleomorphomonas sp. SM30 [AP017626]
3175663
3175574
-
Ser
CGA
-
¡û
>C191125555
CP034444
Alphaproteobacteria
Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 [CP034444]
4185751
4185662
-
Ser
CGA
-
¡û
>C191125576
CP034445
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 [CP034445]
2458796
2458885
+
Ser
CGA
-
¡û
>C191125639
CP034446
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.05.1.1 [CP034446]
5861020
5860931
-
Ser
CGA
-
¡û
>C191125707
CP034447
Alphaproteobacteria
Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 [CP034447]
2260816
2260727
-
Ser
CGA
-
¡û
>C191125762
CP034448
Alphaproteobacteria
Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 [CP034448]
1623948
1623859
-
Ser
CGA
-
¡û
>C191125807
CP034449
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 [CP034449]
3819791
3819702
-
Ser
CGA
-
¡û
>C191125852
CP034451
Alphaproteobacteria
Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 [CP034451]
4112247
4112158
-
Ser
CGA
-
¡û
>W1910569021
JHUP01000081
Alphaproteobacteria
Mesorhizobium amorphae CCBAU 01583 [JHUP]
45897
45808
-
Ser
CGA
[ENA]
¡û
>W1911189464
NQVN01000007
Alphaproteobacteria
Pleomorphomonas carboxyditropha SVCO-16 [NQVN]
43693
43604
-
Ser
CGA
[ENA]
¡û
>W1911242458
NSFT01000005
Alphaproteobacteria
Mesorhizobium sp. WSM4313 [NSFT]
18855
18766
-
Ser
CGA
[ENA]
¡û
>W1911242686
NSFY01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3882 [NSFY]
397631
397720
+
Ser
CGA
[ENA]
¡û
>W1911242734
NSFZ01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3879 [NSFZ]
576221
576132
-
Ser
CGA
[ENA]
¡û
>W1911242773
NSGA01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3876 [NSGA]
600223
600312
+
Ser
CGA
[ENA]
¡û
>W1911242838
NSGB01000007
Alphaproteobacteria
Mesorhizobium sp. WSM3868 [NSGB]
43998
43909
-
Ser
CGA
[ENA]
¡û
>W1911242877
NSGC01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3866 [NSGC]
377212
377123
-
Ser
CGA
[ENA]
¡û
>W1911242937
NSGD01000004
Alphaproteobacteria
Mesorhizobium sp. WSM3864 [NSGD]
132182
132093
-
Ser
CGA
[ENA]
¡û
>W1911242985
NSGE01000005
Alphaproteobacteria
Mesorhizobium sp. WSM3862 [NSGE]
408905
408994
+
Ser
CGA
[ENA]
¡û
>W1911243022
NSGF01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3860 [NSGF]
326003
325914
-
Ser
CGA
[ENA]
¡û
>W1911243084
NSGG01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3859 [NSGG]
182122
182033
-
Ser
CGA
[ENA]
¡û
>W1911695538
QMBQ01000005
Alphaproteobacteria
Mesorhizobium atlanticum CNPSo 3140 [QMBQ]
26037
26126
+
Ser
CGA
[ENA]
¡û
>W1911810765
QYZQ01000001
Alphaproteobacteria
Mesorhizobium sp. DCY119 [QYZQ]
875619
875530
-
Ser
CGA
[ENA]
¡û
>W1911824709
QZWZ01000029
Alphaproteobacteria
Mesorhizobium waimense ICMP19557 [QZWZ]
37957
38046
+
Ser
CGA
[ENA]
¡û
>W1810173880
PJNW01000011
Alphaproteobacteria
Pleomorphomonas diazotrophica R5-392 [PJNW]
292034
292123
+
Ser
CGA
[ENA]
¡û
>W1810390376
PXYK01000013
Alphaproteobacteria
Mesorhizobium ephedrae 6GN30 [PXYK]
132917
132828
-
Ser
CGA
[ENA]
¡û
>W1810394315
PYBP01000002
Alphaproteobacteria
Nitratireductor sp. StC3 [PYBP]
7544
7455
-
Ser
CGA
[ENA]
¡û
>W1810699018
QMBP01000015
Alphaproteobacteria
Mesorhizobium hawassense AC99b [QMBP]
94929
94840
-
Ser
CGA
[ENA]
¡û
>W121018087
AGSN01000239
Alphaproteobacteria
Mesorhizobium amorphae CCNWGS0123 [AGSN]
25081
24992
-
Ser
CGA
[ENA]
¡û
>W1610083654
CCND01000002
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
147386
147475
+
Ser
CGA
[ENA]
¡û
>W1610719169
LLZQ01000001
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
496687
496598
-
Ser
CGA
[ENA]
¡û
>W1610737688
LMOH01000028
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
231622
231711
+
Ser
CGA
[ENA]
¡û
>W1610844470
LPWA01000148
Alphaproteobacteria
Mesorhizobium loti [LPWA]
6926
7015
+
Ser
CGA
[ENA]
¡û
>W1610946251
LUYO01000142
Alphaproteobacteria
Rhodobacterales bacterium Alpha_02 [LUYO]
18521
18432
-
Ser
CGA
[ENA]
¡û
>W1611020242
LYTM01000045
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
82387
82298
-
Ser
CGA
[ENA]
¡û
>W1611020349
LYTP01000001
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
696351
696440
+
Ser
CGA
[ENA]
¡û
>W1710088671
CCND01000002
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
147386
147475
+
Ser
CGA
[ENA]
¡û
>W1710569719
FOUQ01000004
Alphaproteobacteria
Pleomorphomonas diazotrophica [FOUQ]
292248
292337
+
Ser
CGA
[ENA]
¡û
>W1710571239
FOVT01000004
Alphaproteobacteria
Mesorhizobium sp. NFR06 [FOVT]
208678
208589
-
Ser
CGA
[ENA]
¡û
>W1710578111
FPBI01000001
Alphaproteobacteria
Mesorhizobium sp. YR577 [FPBI]
155285
155196
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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