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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297606 (143 seq.)
>W1711502628
MKSW01000013
Actinomycetota
Actinobacteria bacterium 69-20 [MKSW]
160846
160919
+
Arg
CCT
[ENA]
¡û
>W1712038286
NFIU01000019
Actinomycetota
Olsenella sp. An290 [NFIU]
22416
22341
-
Arg
CCT
[ENA]
¡û
>W1712038511
NFIZ01000012
Actinomycetota
Olsenella sp. An285 [NFIZ]
49797
49722
-
Arg
CCT
[ENA]
¡û
>W1712038839
NFJF01000008
Actinomycetota
Olsenella sp. An270 [NFJF]
17168
17243
+
Arg
CCT
[ENA]
¡û
>W1712040242
NFKF01000006
Actinomycetota
Olsenella sp. An188 [NFKF]
41438
41363
-
Arg
CCT
[ENA]
¡û
>C171130102
LT635455
Actinomycetota
Olsenella timonensis Marseille-P2300 [LT635455]
2070577
2070652
+
Arg
CCT
-
¡û
>WENV180007984
FLSB01002099
[FLSB] metagenome; saliva
1529
1454
-
Arg
CCT
[ENA]
¢þ
>WENV180007985
FLSB01002099
[FLSB] metagenome; saliva
1289
1214
-
Arg
CCT
[ENA]
¢þ
>WENV180412281
OBVA01000502
[OBVA] human gut metagenome; faeces
9675
9750
+
Arg
CCT
[ENA]
¢þ
>WENV180550270
OCIZ01075312
[OCIZ] human oral metagenome; human oral
206
131
-
Arg
CCT
[ENA]
¢þ
>WENV180551394
OCJF01019707
[OCJF] human oral metagenome; human oral
286
361
+
Arg
CCT
[ENA]
¢þ
>WENV180705376
ODEJ01003751
[ODEJ] human metagenome; G_DNA_Tongue dorsum
537
462
-
Arg
CCT
[ENA]
¢þ
>WENV180708595
ODFJ01003524
[ODFJ] human metagenome; G_DNA_Tongue dorsum
6252
6327
+
Arg
CCT
[ENA]
¢þ
>WENV180720421
ODGJ01044013
[ODGJ] human metagenome; G_DNA_Tongue dorsum
480
405
-
Arg
CCT
[ENA]
¢þ
>WENV180724527
ODGR01001088
[ODGR] human metagenome; G_DNA_Tongue dorsum
105
30
-
Arg
CCT
[ENA]
¢þ
>WENV180757374
ODHW01000275
[ODHW] human metagenome; G_DNA_Tongue dorsum
13786
13861
+
Arg
CCT
[ENA]
¢þ
>WENV180763302
ODIA01000480
[ODIA] human metagenome; G_DNA_Tongue dorsum
20958
20883
-
Arg
CCT
[ENA]
¢þ
>WENV180768746
ODIG01015121
[ODIG] human metagenome; G_DNA_Tongue dorsum
330
255
-
Arg
CCT
[ENA]
¢þ
>WENV180769868
ODIG01203350
[ODIG] human metagenome; G_DNA_Tongue dorsum
90
15
-
Arg
CCT
[ENA]
¢þ
>WENV180773427
ODIJ01000246
[ODIJ] human metagenome; G_DNA_Tongue dorsum
12087
12162
+
Arg
CCT
[ENA]
¢þ
>WENV180776503
ODIK01049621
[ODIK] human metagenome; G_DNA_Tongue dorsum
104
29
-
Arg
CCT
[ENA]
¢þ
>WENV180780195
ODIN01067701
[ODIN] human metagenome; G_DNA_Throat
318
243
-
Arg
CCT
[ENA]
¢þ
>WENV180793145
ODIW01009207
[ODIW] human metagenome; G_DNA_Tongue dorsum
1849
1924
+
Arg
CCT
[ENA]
¢þ
>WENV180794903
ODIZ01009410
[ODIZ] human metagenome; G_DNA_Tongue dorsum
128
53
-
Arg
CCT
[ENA]
¢þ
>WENV180798034
ODJB01222483
[ODJB] human metagenome; G_DNA_Supragingival plaque
80
5
-
Arg
CCT
[ENA]
¢þ
>WENV180802872
ODJE01012536
[ODJE] human metagenome; G_DNA_Tongue dorsum
83
8
-
Arg
CCT
[ENA]
¢þ
>WENV180815482
ODJP01000520
[ODJP] human metagenome; G_DNA_Tongue dorsum
444
369
-
Arg
CCT
[ENA]
¢þ
>WENV180854743
ODKX01009737
[ODKX] human metagenome; G_DNA_Tongue dorsum
2166
2241
+
Arg
CCT
[ENA]
¢þ
>WENV180864682
ODLH01105229
[ODLH] human metagenome; G_DNA_Tongue dorsum
92
17
-
Arg
CCT
[ENA]
¢þ
>WENV180866596
ODLJ01039477
[ODLJ] human metagenome; G_DNA_Tongue dorsum
481
406
-
Arg
CCT
[ENA]
¢þ
>WENV180874623
ODLQ01002294
[ODLQ] human metagenome; G_DNA_Tongue dorsum
1532
1607
+
Arg
CCT
[ENA]
¢þ
>WENV180880046
ODLZ01006422
[ODLZ] human metagenome; G_DNA_Tongue dorsum
964
889
-
Arg
CCT
[ENA]
¢þ
>WENV180882794
ODMC01000534
[ODMC] human metagenome; G_DNA_Tongue dorsum
29754
29829
+
Arg
CCT
[ENA]
¢þ
>WENV180890433
ODMO01002321
[ODMO] human metagenome; G_DNA_Tongue dorsum
4017
3942
-
Arg
CCT
[ENA]
¢þ
>WENV180899936
ODOJ01000150
[ODOJ] human metagenome; G_DNA_Tongue dorsum
30441
30366
-
Arg
CCT
[ENA]
¢þ
>WENV180901374
ODOK01000013
[ODOK] human metagenome; G_DNA_Tongue dorsum
108
33
-
Arg
CCT
[ENA]
¢þ
>WENV180920584
ODTH01010476
[ODTH] human metagenome; G_DNA_Tongue dorsum
104
29
-
Arg
CCT
[ENA]
¢þ
>WENV180929661
ODTN01007912
[ODTN] human metagenome; G_DNA_Tongue dorsum
530
455
-
Arg
CCT
[ENA]
¢þ
>WENV180930887
ODTP01000585
[ODTP] human metagenome; G_DNA_Tongue dorsum
20437
20512
+
Arg
CCT
[ENA]
¢þ
>WENV180948163
ODUG01000347
[ODUG] human metagenome; G_DNA_Tongue dorsum
9645
9570
-
Arg
CCT
[ENA]
¢þ
>WENV180952066
ODUH01111331
[ODUH] human metagenome; G_DNA_Subgingival plaque
143
68
-
Arg
CCT
[ENA]
¢þ
>WENV180953190
ODUI01013360
[ODUI] human metagenome; G_DNA_Tongue dorsum
1902
1977
+
Arg
CCT
[ENA]
¢þ
>WENV180955227
ODUJ01050121
[ODUJ] human metagenome; G_DNA_Tongue dorsum
153
228
+
Arg
CCT
[ENA]
¢þ
>WENV180959044
ODUM01000031
[ODUM] human metagenome; G_DNA_Tongue dorsum
53669
53594
-
Arg
CCT
[ENA]
¢þ
>WENV180967545
ODUT01001202
[ODUT] human metagenome; G_DNA_Tongue dorsum
8535
8610
+
Arg
CCT
[ENA]
¢þ
>WENV180976325
ODUY01078551
[ODUY] human metagenome; G_DNA_Supragingival plaque
486
561
+
Arg
CCT
[ENA]
¢þ
>WENV180985108
ODVJ01000662
[ODVJ] human metagenome; G_DNA_Tongue dorsum
8884
8959
+
Arg
CCT
[ENA]
¢þ
>WENV180989921
ODVN01000177
[ODVN] human metagenome; G_DNA_Tongue dorsum
41853
41928
+
Arg
CCT
[ENA]
¢þ
>WENV181011699
ODWI01082310
[ODWI] human metagenome; G_DNA_Tongue dorsum
275
350
+
Arg
CCT
[ENA]
¢þ
>WENV181014086
ODWN01012467
[ODWN] human metagenome; G_DNA_Tongue dorsum
178
103
-
Arg
CCT
[ENA]
¢þ
>WENV181016681
ODWR01004327
[ODWR] human metagenome; G_DNA_Tongue dorsum
2033
1958
-
Arg
CCT
[ENA]
¢þ
>WENV181021034
ODWV01001651
[ODWV] human metagenome; G_DNA_Tongue dorsum
8583
8508
-
Arg
CCT
[ENA]
¢þ
>WENV181021738
ODWV01036165
[ODWV] human metagenome; G_DNA_Tongue dorsum
372
297
-
Arg
CCT
[ENA]
¢þ
>WENV181033915
ODXN01039612
[ODXN] human metagenome; G_DNA_Tongue dorsum
41
116
+
Arg
CCT
[ENA]
¢þ
>WENV181039316
ODXQ01016602
[ODXQ] human metagenome; G_DNA_Tongue dorsum
83
8
-
Arg
CCT
[ENA]
¢þ
>WENV181041903
ODXS01069999
[ODXS] human metagenome; G_DNA_Tongue dorsum
368
443
+
Arg
CCT
[ENA]
¢þ
>WENV181045471
ODXW01000270
[ODXW] human metagenome; G_DNA_Tongue dorsum
37990
38065
+
Arg
CCT
[ENA]
¢þ
>WENV181058935
ODYL01056019
[ODYL] human metagenome; G_DNA_Tongue dorsum
351
426
+
Arg
CCT
[ENA]
¢þ
>WENV181069288
ODZZ01026746
[ODZZ] human metagenome; G_DNA_Tongue dorsum
378
453
+
Arg
CCT
[ENA]
¢þ
>WENV181086223
OEAY01000210
[OEAY] human metagenome; G_DNA_Tongue dorsum
9177
9252
+
Arg
CCT
[ENA]
¢þ
>WENV181095061
OEBY01002829
[OEBY] human metagenome; G_DNA_Tongue dorsum
8582
8657
+
Arg
CCT
[ENA]
¢þ
>WENV181096723
OECA01000190
[OECA] human metagenome; G_DNA_Tongue dorsum
4294
4219
-
Arg
CCT
[ENA]
¢þ
>WENV181101565
OECT01000073
[OECT] human metagenome; G_DNA_Tongue dorsum
40704
40779
+
Arg
CCT
[ENA]
¢þ
>WENV181105644
OEED01009919
[OEED] human metagenome; G_DNA_Tongue dorsum
2210
2285
+
Arg
CCT
[ENA]
¢þ
>WENV181116385
OEFA01003482
[OEFA] human gut metagenome; human gut
671
596
-
Arg
CCT
[ENA]
¢þ
>WENV181124517
OEFT01000030
[OEFT] human metagenome; G_DNA_Tongue dorsum
11285
11360
+
Arg
CCT
[ENA]
¢þ
>WENV181128725
OEFX01000078
[OEFX] human metagenome; G_DNA_Tongue dorsum
624
549
-
Arg
CCT
[ENA]
¢þ
>WENV181130873
OEFY01123406
[OEFY] human metagenome; G_DNA_Throat
126
201
+
Arg
CCT
[ENA]
¢þ
>WENV181135413
OEGG01015699
[OEGG] human metagenome; G_DNA_Tongue dorsum
487
412
-
Arg
CCT
[ENA]
¢þ
>WENV181139056
OEGN01002608
[OEGN] human metagenome; G_DNA_Tongue dorsum
331
256
-
Arg
CCT
[ENA]
¢þ
>WENV181141147
OEGT01001471
[OEGT] human metagenome; G_DNA_Throat
7454
7379
-
Arg
CCT
[ENA]
¢þ
>WENV181150009
OEHW01000210
[OEHW] human metagenome; G_DNA_Tongue dorsum
36872
36947
+
Arg
CCT
[ENA]
¢þ
>WENV181218388
OFCM01000307
[OFCM] metagenome; Human gut stool
6986
7061
+
Arg
CCT
[ENA]
¢þ
>WENV181222311
OFDA01000579
[OFDA] metagenome; Human gut stool
1960
2035
+
Arg
CCT
[ENA]
¢þ
>WENV181437597
OGDF01166839
[OGDF] human gut metagenome; human gut
436
511
+
Arg
CCT
[ENA]
¢þ
>WENV181482781
OGFJ01057406
[OGFJ] metagenome; Human gut stool
112
37
-
Arg
CCT
[ENA]
¢þ
>WENV181689730
OGOY01004388
[OGOY] human gut metagenome; faeces
8722
8647
-
Arg
CCT
[ENA]
¢þ
>WENV181691834
OGOZ01026297
[OGOZ] human gut metagenome; faeces
488
413
-
Arg
CCT
[ENA]
¢þ
>WENV181700776
OGPG01077599
[OGPG] human gut metagenome; faeces
90
165
+
Arg
CCT
[ENA]
¢þ
>WENV181786206
OGRN01001069
[OGRN] human gut metagenome; faeces
20021
20096
+
Arg
CCT
[ENA]
¢þ
>WENV181868895
OGWX01003632
[OGWX] human gut metagenome; faeces
5265
5340
+
Arg
CCT
[ENA]
¢þ
>WENV181896846
OGXS01004737
[OGXS] human gut metagenome; faeces
3283
3358
+
Arg
CCT
[ENA]
¢þ
>WENV181913398
OGYE01006987
[OGYE] human gut metagenome; faeces
2869
2794
-
Arg
CCT
[ENA]
¢þ
>WENV181917025
OGYG01001604
[OGYG] human gut metagenome; faeces
11983
12058
+
Arg
CCT
[ENA]
¢þ
>WENV181942171
OGYY01054948
[OGYY] human gut metagenome; faeces
652
577
-
Arg
CCT
[ENA]
¢þ
>WENV181961849
OGZO01031028
[OGZO] human gut metagenome; faeces
447
372
-
Arg
CCT
[ENA]
¢þ
>WENV181981662
OHAG01004502
[OHAG] human gut metagenome; faeces
3556
3631
+
Arg
CCT
[ENA]
¢þ
>WENV182278682
OHUT01002042
[OHUT] human gut metagenome; feces
1208
1283
+
Arg
CCT
[ENA]
¢þ
>WENV182281424
OHVB01002915
[OHVB] human gut metagenome; feces
1959
1884
-
Arg
CCT
[ENA]
¢þ
>WENV182292827
OHWB01010817
[OHWB] human gut metagenome; feces
896
821
-
Arg
CCT
[ENA]
¢þ
>WENV182336264
OHZS01008913
[OHZS] human gut metagenome; feces
1115
1190
+
Arg
CCT
[ENA]
¢þ
>WENV182361998
OICD01003328
[OICD] human gut metagenome; feces
2481
2406
-
Arg
CCT
[ENA]
¢þ
>WENV182389706
OIED01002248
[OIED] human gut metagenome; feces
4954
4879
-
Arg
CCT
[ENA]
¢þ
>WENV182873920
OKRW01002145
[OKRW] human gut metagenome; faeces
8684
8609
-
Arg
CCT
[ENA]
¢þ
>WENV182926923
OKUM01003246
[OKUM] human gut metagenome; feces
1502
1427
-
Arg
CCT
[ENA]
¢þ
>WENV182929752
OKUQ01005348
[OKUQ] human gut metagenome; feces
2372
2447
+
Arg
CCT
[ENA]
¢þ
>WENV182941161
OKVG01000516
[OKVG] human gut metagenome; human gut
17861
17936
+
Arg
CCT
[ENA]
¢þ
>WENV183047647
OLGF01010234
[OLGF] human gut metagenome; faeces
1468
1393
-
Arg
CCT
[ENA]
¢þ
>WENV183096770
OLNE01000229
[OLNE] human gut metagenome; faeces
51851
51926
+
Arg
CCT
[ENA]
¢þ
>WENV183097636
OLNE01006667
[OLNE] human gut metagenome; faeces
1269
1194
-
Arg
CCT
[ENA]
¢þ
>WENV183100322
OLNF01101172
[OLNF] human gut metagenome; faeces
503
428
-
Arg
CCT
[ENA]
¢þ
>WENV183106571
OLNL01013221
[OLNL] human gut metagenome; faeces
1544
1469
-
Arg
CCT
[ENA]
¢þ
>WENV183138186
OLOH01001138
[OLOH] human gut metagenome; faeces
8028
7953
-
Arg
CCT
[ENA]
¢þ
>WENV183146046
OLOM01002813
[OLOM] human gut metagenome; faeces
6383
6308
-
Arg
CCT
[ENA]
¢þ
>WENV183146431
OLOM01008099
[OLOM] human gut metagenome; faeces
3378
3453
+
Arg
CCT
[ENA]
¢þ
>WENV183149396
OLOO01005131
[OLOO] human gut metagenome; faeces
1758
1683
-
Arg
CCT
[ENA]
¢þ
>WENV183163914
OLOW01043609
[OLOW] human gut metagenome; faeces
494
569
+
Arg
CCT
[ENA]
¢þ
>WENV183178234
OLPG01051452
[OLPG] human gut metagenome; faeces
529
604
+
Arg
CCT
[ENA]
¢þ
>WENV183187599
OLPO01036222
[OLPO] human gut metagenome; faeces
240
165
-
Arg
CCT
[ENA]
¢þ
>WENV183191063
OLPR01003927
[OLPR] human gut metagenome; faeces
259
184
-
Arg
CCT
[ENA]
¢þ
>WENV183203665
OLPY01002466
[OLPY] human gut metagenome; faeces
3588
3663
+
Arg
CCT
[ENA]
¢þ
>WENV183205762
OLPZ01038716
[OLPZ] human gut metagenome; faeces
176
101
-
Arg
CCT
[ENA]
¢þ
>WENV183223205
OLQM01009029
[OLQM] human gut metagenome; faeces
4941
4866
-
Arg
CCT
[ENA]
¢þ
>WENV183249608
OLRG01005798
[OLRG] human gut metagenome; faeces
3345
3420
+
Arg
CCT
[ENA]
¢þ
>WENV183254606
OLRJ01005669
[OLRJ] human gut metagenome; faeces
1431
1356
-
Arg
CCT
[ENA]
¢þ
>WENV183297423
OLSM01003010
[OLSM] human gut metagenome; faeces
2661
2586
-
Arg
CCT
[ENA]
¢þ
>WENV183347913
OLWU01000177
[OLWU] human gut metagenome; feces
10670
10745
+
Arg
CCT
[ENA]
¢þ
>WENV183364098
OLXM01001259
[OLXM] human gut metagenome; feces
4402
4327
-
Arg
CCT
[ENA]
¢þ
>WENV183367406
OLXQ01000217
[OLXQ] human gut metagenome; feces
4391
4316
-
Arg
CCT
[ENA]
¢þ
>WENV183385452
OLYO01003605
[OLYO] human gut metagenome; feces
580
505
-
Arg
CCT
[ENA]
¢þ
>WENV183409163
OMAE01032544
[OMAE] human gut metagenome; feces
297
222
-
Arg
CCT
[ENA]
¢þ
>WENV183437659
OMCD01041538
[OMCD] human gut metagenome; feces
223
148
-
Arg
CCT
[ENA]
¢þ
>WENV183474426
OMET01042991
[OMET] human gut metagenome; feces
492
567
+
Arg
CCT
[ENA]
¢þ
>WENV183520496
OMNT01019649
[OMNT] human gut metagenome; faeces
1314
1389
+
Arg
CCT
[ENA]
¢þ
>WENV183602278
OODJ01028090
[OODJ] human gut metagenome; human gut
680
755
+
Arg
CCT
[ENA]
¢þ
>WENV170010153
APMI01009833
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
13096
13021
-
Arg
CCT
[ENA]
¢þ
>W141382713
JDFG01000039
Actinomycetota
Atopobium sp. BS2 [JDFG]
83301
83226
-
Arg
CCT
[ENA]
¡û
>W141382733
JDFH01000003
Actinomycetota
Atopobium sp. ICM42b [JDFH]
64070
64145
+
Arg
CCT
[ENA]
¡û
>WENV170636707
JFBN01305178
[JFBN] chicken gut metagenome; ceca of Broiler chicken
200
125
-
Arg
CCT
[ENA]
¢þ
>WENV170669719
LAHS01001653
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
77
2
-
Arg
CCT
[ENA]
¢þ
>C181200519
CP031447
Actinomycetota
Austwickia chelonae LK16-18 [CP031447]
2369886
2369959
+
Arg
CCT
-
¡û
>C191002853
AP018530
Actinomycetota
Olsenella sp. GAM18 [AP018530]
57799
57874
+
Arg
CCT
-
¡û
>W09108301
ABTD01000001
Actinomycetota
Lancefieldella parvula DSM 20469 [ABTD]
590996
590921
-
Arg
CCT
[ENA]
¡û
>W1910237186
FPKO01000009
Actinomycetota
Thermophilibacter mediterraneus Marseille-P3256 [FPKO]
616542
616617
+
Arg
CCT
[ENA]
¡û
>W1910281383
FQTO01000003
Actinomycetota
Thermophilibacter provencensis Marseille-P2912 [FQTO]
517804
517879
+
Arg
CCT
[ENA]
¡û
>W1810830958
QSNG01000001
Actinomycetota
Paratractidigestivibacter faecalis KCTC 15699 [QSNG]
1959466
1959541
+
Arg
CCT
[ENA]
¡û
>C151048649
CP009302
Actinomycetota
Berryella intestinalis 68-1-3 [CP009302]
52800
52725
-
Arg
CCT
[Ensembl]
¡û
>C10100623
CP001721
Actinomycetota
Lancefieldella parvula DSM 20469 [CP001721]
1517554
1517479
-
Arg
CCT
[Ensembl]
¡û
>W1511351071
JRMX01000013
Actinomycetota
Arcanobacterium sp. S3PF19 [JRMX]
29831
29904
+
Arg
CCT
[ENA]
¡û
>W1511351305
JRND01000007
Actinomycetota
Lancefieldella parvula DNF00906 [JRND]
75608
75683
+
Arg
CCT
[ENA]
¡û
>W121126445
BAGZ01000008
Actinomycetota
Austwickia chelonae NBRC 105200 [BAGZ]
242661
242588
-
Arg
CCT
[ENA]
¡û
>WENV078596
AAQK01002982
Gut microbiome of Human (healthy human stool sample 7)
7522
7445
-
Arg
CCT
[ENA]
>W1710555161
FOJD01000001
Actinomycetota
Austwickia chelonae [FOJD]
529398
529325
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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