This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297661 (27 seq.)
>W1711792362
MWJQ01000001
Betaproteobacteria
Burkholderia sp. A27 [MWJQ]
1002546
1002470
-
Ile
GAT
[ENA]
¡û
>WENV180000128
CZVZ01002053
[CZVZ] metagenome; unknown
758
682
-
Ile
GAT
[ENA]
¢þ
>WENV180285945
OBID01842834
[OBID] metagenome; sludge
94
170
+
Ile
GAT
[ENA]
¢þ
>WENV181296947
OFHK01002987
[OFHK] soil metagenome; Clay
2181
2257
+
Ile
GAT
[ENA]
¢þ
>WENV181415454
OGCL01011262
[OGCL] hot springs metagenome; Hot spring water
2669
2593
-
Ile
GAT
[ENA]
¢þ
>WENV181462783
OGEN01049118
[OGEN] metagenome; Human gut stool
260
336
+
Ile
GAT
[ENA]
¢þ
>WENV181632503
OGMT01020360
[OGMT] metagenome; Human gut stool
583
507
-
Ile
GAT
[ENA]
¢þ
>WENV183663466
ORJL010287201
[ORJL] groundwater metagenome; groundwater
24
100
+
Ile
GAT
[ENA]
¢þ
>WENV183664402
ORJL010375209
[ORJL] groundwater metagenome; groundwater
273
349
+
Ile
GAT
[ENA]
¢þ
>WENV183666369
ORJL010545285
[ORJL] groundwater metagenome; groundwater
174
250
+
Ile
GAT
[ENA]
¢þ
>WENV183668500
ORJL010746967
[ORJL] groundwater metagenome; groundwater
678
602
-
Ile
GAT
[ENA]
¢þ
>WENV183675715
ORJL011543064
[ORJL] groundwater metagenome; groundwater
1000
924
-
Ile
GAT
[ENA]
¢þ
>WENV183684674
ORMF010740601
[ORMF] groundwater metagenome; groundwater
6
82
+
Ile
GAT
[ENA]
¢þ
>WENV183693342
ORMF012066238
[ORMF] groundwater metagenome; groundwater
686
610
-
Ile
GAT
[ENA]
¢þ
>WENV170570998
FLOH01000050
[FLOH] marine metagenome; water
76401
76477
+
Ile
GAT
[ENA]
¢þ
>WENV170714599
LNFM01085241
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1347
1423
+
Ile
GAT
[ENA]
¢þ
>WENV170996287
MWWF01206757
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
175
251
+
Ile
GAT
[ENA]
¢þ
>C181109115
CP024941
Betaproteobacteria
Paraburkholderia terricola mHS1 [CP024941, CP024942]
1209530
1209606
+
Ile
GAT
-
¡û
>C181109139
CP024941
Betaproteobacteria
Paraburkholderia terricola mHS1 [CP024941, CP024942]
3735629
3735553
-
Ile
GAT
-
¡û
>C181109146
CP024941
Betaproteobacteria
Paraburkholderia terricola mHS1 [CP024941, CP024942]
3568211
3568135
-
Ile
GAT
-
¡û
>C181109167
CP024942
Betaproteobacteria
Paraburkholderia terricola mHS1 [CP024941, CP024942]
1439668
1439744
+
Ile
GAT
-
¡û
>C181109171
CP024942
Betaproteobacteria
Paraburkholderia terricola mHS1 [CP024941, CP024942]
162970
162894
-
Ile
GAT
-
¡û
>C151000906
AP012547
Betaproteobacteria
Sulfuritalea hydrogenivorans sk43H DSM 22779 [AP012547]
1068881
1068957
+
Ile
GAT
[Ensembl]
¡û
>C151000921
AP012547
Betaproteobacteria
Sulfuritalea hydrogenivorans sk43H DSM 22779 [AP012547]
3257141
3257065
-
Ile
GAT
[Ensembl]
¡û
>ENV09000750
ABSP01029952
Freshwater sediment metagenome lwMethane_C1
89
165
+
Ile
GAT
[ENA]
¡û
>ENV000448
AF422560
Environmental sample from ENV division of INSDC
113
189
+
Ile
GAT
[ENA]
>ENV000453
AF422563
Environmental sample from ENV division of INSDC
114
190
+
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK