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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297665 (54 seq.)
>W1711006954
LQOT01000044
Actinomycetota
Mycolicibacter engbaekii [LQOT]
7615
7690
+
Arg
ACG
[ENA]
¡û
>W1711082148
LSTQ01000023
Actinomycetota
Corynebacterium stationis [LSTQ]
264319
264244
-
Arg
ACG
[ENA]
¡û
>W1711116415
LUAZ01000029
Actinomycetota
Cellulosimicrobium sp. I38E [LUAZ]
6912
6839
-
Arg
ACG
[ENA]
¡û
>W1711276865
LZIM01000024
Actinomycetota
Mycolicibacter sinensis sinense [LZIM]
56599
56526
-
Arg
ACG
[ENA]
¡û
>W1711278009
LZJK01000009
Actinomycetota
Mycolicibacter sinensis sinense [LZJK]
29595
29670
+
Arg
ACG
[ENA]
¡û
>W1711279057
LZKG01000083
Actinomycetota
Mycolicibacter sinensis sinense [LZKG]
29595
29670
+
Arg
ACG
[ENA]
¡û
>W1711280068
LZLB01000050
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZLB]
66104
66177
+
Arg
ACG
[ENA]
¡û
>W1711281483
LZMF01000062
Actinomycetota
Mycolicibacter sinensis sinense [LZMF]
7315
7388
+
Arg
ACG
[ENA]
¡û
>C171001812
CP009244
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 DSM 20306 [CP009244]
237033
237106
+
Arg
ACG
-
¡û
>C171002118
CP009251
Actinomycetota
Corynebacterium stationis 622 [CP009251]
231094
231169
+
Arg
ACG
-
¡û
>C171098495
CP019705
Actinomycetota
Corynebacterium ammoniagenes KCCM 40472 [CP019705]
323625
323698
+
Arg
ACG
-
¡û
>C171101824
CP019963
Actinomycetota
Corynebacterium stationis LMG 21670 [CP019963]
38992
39065
+
Arg
ACG
-
¡û
>WENV180018367
FSYX01000469
[FSYX] metagenome; soil
4030
3955
-
Arg
ACG
[ENA]
¢þ
>WENV180745537
ODHL01000012
[ODHL] human metagenome; G_DNA_L_Retroauricular crease
150598
150525
-
Arg
ACG
[ENA]
¢þ
>WENV180765892
ODID01005105
[ODID] human metagenome; G_DNA_Attached/Keratinized gingiva
139
64
-
Arg
ACG
[ENA]
¢þ
>WENV180878796
ODLY01000038
[ODLY] human metagenome; G_DNA_Anterior nares
4443
4370
-
Arg
ACG
[ENA]
¢þ
>WENV180914932
ODTA01002345
[ODTA] human metagenome; G_DNA_Anterior nares
99
26
-
Arg
ACG
[ENA]
¢þ
>WENV180952067
ODUH01112145
[ODUH] human metagenome; G_DNA_Subgingival plaque
422
347
-
Arg
ACG
[ENA]
¢þ
>WENV180952263
ODUH01195916
[ODUH] human metagenome; G_DNA_Subgingival plaque
272
197
-
Arg
ACG
[ENA]
¢þ
>WENV181010026
ODWG01000028
[ODWG] human metagenome; G_DNA_Anterior nares
1089
1162
+
Arg
ACG
[ENA]
¢þ
>WENV181115904
OEES01009847
[OEES] human metagenome; G_DNA_Anterior nares
93
20
-
Arg
ACG
[ENA]
¢þ
>WENV181124366
OEFR01000551
[OEFR] human metagenome; G_DNA_Anterior nares
668
595
-
Arg
ACG
[ENA]
¢þ
>W141220276
AZXR01000952
Actinomycetota
Promicromonospora kroppenstedtii DSM 19349 [AZXR]
4722
4649
-
Arg
ACG
[ENA]
¡û
>W141241259
CAHD01000075
Actinomycetota
Cellulomonas massiliensis JC225 [CAHD]
2695
2768
+
Arg
ACG
[ENA]
¡û
>WENV182641599
OJLJ01000012
[OJLJ] metagenome; surface
18572
18645
+
Arg
ACG
[ENA]
¢þ
>WENV182643014
OJLS01000089
[OJLS] metagenome; surface
4086
4159
+
Arg
ACG
[ENA]
¢þ
>WENV182643111
OJLS01001015
[OJLS] metagenome; surface
2487
2560
+
Arg
ACG
[ENA]
¢þ
>WENV183511373
OMJG01000109
[OMJG] food metagenome; Cotija cheese
58228
58301
+
Arg
ACG
[ENA]
¢þ
>C191071520
CP030033
Actinomycetota
Cryobacterium soli GCJ02 [CP030033]
2252655
2252582
-
Arg
ACG
-
¡û
>C191101021
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
314672
314599
-
Arg
ACG
-
¡û
>W1910442348
FWFE01000018
Actinomycetota
Corynebacterium casei JB4 [FWFE]
25655
25728
+
Arg
ACG
[ENA]
¡û
>W1911596611
PNHH01000009
Actinomycetota
Corynebacterium kroppenstedtii UMB0869 [PNHH]
237
164
-
Arg
ACG
[ENA]
¡û
>W1810242623
PPXD01000030
Actinomycetota
Cryobacterium zongtaii TMN-42 [PPXD]
19552
19479
-
Arg
ACG
[ENA]
¡û
>W1810279509
PSVR01000016
Actinomycetota
Rathayibacter rathayi AY1D8 [PSVR]
26703
26630
-
Arg
ACG
[ENA]
¡û
>W1810326731
PUGE01000005
Actinomycetota
Corynebacterium sp. J010B-136 [PUGE]
223561
223634
+
Arg
ACG
[ENA]
¡û
>SRA1015201
SRR023845.497204
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
86
13
-
Arg
ACG
[SRA]
>C151005917
CP004350
Actinomycetota
Corynebacterium casei LMG S-19264 [CP004350]
301701
301774
+
Arg
ACG
[Ensembl]
¡û
>W10116348
ADNS01000003
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
5306
5379
+
Arg
ACG
[ENA]
¡û
>W1511219734
JNBQ01000003
Actinomycetota
Cellulosimicrobium funkei U11 [JNBQ]
372535
372608
+
Arg
ACG
[ENA]
¡û
>W11121017
ADNS01000003
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
5306
5379
+
Arg
ACG
[ENA]
¡û
>C161070406
CP014279
Actinomycetota
Corynebacterium stationis ATCC 6872 [CP014279]
216316
216389
+
Arg
ACG
[Ensembl]
¡û
>W121127383
CAFW01000014
Actinomycetota
Corynebacterium casei UCMA 3821 [CAFW]
5685
5758
+
Arg
ACG
[ENA]
¡û
>W1610437197
FJVP01000039
Actinomycetota
Mycolicibacter icosiumassiliensis 8WA6 [FJVP]
30138
30065
-
Arg
ACG
[ENA]
¡û
>W1610601094
LFOE01000041
Actinomycetota
Mycolicibacter kumamotonensis kumamotonense [LFOE]
10165
10238
+
Arg
ACG
[ENA]
¡û
>W1610920933
LSTQ01000023
Actinomycetota
Corynebacterium stationis [LSTQ]
264319
264244
-
Arg
ACG
[ENA]
¡û
>W1610927657
LUAZ01000029
Actinomycetota
Cellulosimicrobium sp. I38E [LUAZ]
6912
6839
-
Arg
ACG
[ENA]
¡û
>W1611036150
LZIM01000024
Actinomycetota
Mycolicibacter sinensis sinense [LZIM]
56599
56526
-
Arg
ACG
[ENA]
¡û
>W1611037294
LZJK01000009
Actinomycetota
Mycolicibacter sinensis sinense [LZJK]
29595
29670
+
Arg
ACG
[ENA]
¡û
>W1611038342
LZKG01000083
Actinomycetota
Mycolicibacter sinensis sinense [LZKG]
29595
29670
+
Arg
ACG
[ENA]
¡û
>W1611039353
LZLB01000050
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZLB]
66104
66177
+
Arg
ACG
[ENA]
¡û
>W1611040768
LZMF01000062
Actinomycetota
Mycolicibacter sinensis sinense [LZMF]
7315
7388
+
Arg
ACG
[ENA]
¡û
>W1710436825
FJVP01000039
Actinomycetota
Mycolicibacter icosiumassiliensis 8WA6 [FJVP]
30138
30065
-
Arg
ACG
[ENA]
¡û
>W1710608093
FXAP01000006
Actinomycetota
Plantibacter flavus [FXAP]
132186
132259
+
Arg
ACG
[ENA]
¡û
>W1710722610
LFOE01000041
Actinomycetota
Mycolicibacter kumamotonensis kumamotonense [LFOE]
10165
10238
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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