This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297688 (25 seq.)
>W1711612625
MOXD01000002
Gammaproteobacteria
Serratia oryzae J11-6 [MOXD]
205350
205426
+
Arg
TCT
[ENA]
¡û
>W1711743731
MUFS01000003
Gammaproteobacteria
Leclercia adecarboxylata [MUFS]
50988
50912
-
Arg
TCT
[ENA]
¡û
>WENV182408804
OIFG01000012
[OIFG] human gut metagenome; stool
101568
101492
-
Arg
TCT
[ENA]
¢þ
>WENV182826027
OKCO01005355
[OKCO] human gut metagenome; human gut
222
298
+
Arg
TCT
[ENA]
¢þ
>WENV183730474
PJTS01000044
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
43903
43827
-
Arg
TCT
[ENA]
¢þ
>WENV170022230
BCQK01002368
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
1698
1774
+
Arg
TCT
[ENA]
¢þ
>C181128466
CP026167
Gammaproteobacteria
Leclercia sp. LSNIH1 [CP026167]
2098841
2098917
+
Arg
TCT
-
¡û
>C181133332
CP026387
Gammaproteobacteria
Leclercia sp. LSNIH3 [CP026387]
1266721
1266645
-
Arg
TCT
-
¡û
>C181195470
CP031101
Gammaproteobacteria
Leclercia sp. W17 w17 [CP031101]
3666191
3666115
-
Arg
TCT
-
¡û
>C181195559
CP031104
Gammaproteobacteria
Leclercia sp. W6 [CP031104]
2498956
2498880
-
Arg
TCT
-
¡û
>C191148648
CP036199
Gammaproteobacteria
Leclercia adecarboxylata 16005813 [CP036199]
4333807
4333731
-
Arg
TCT
-
¡û
>C191183728
CP040889
Gammaproteobacteria
Leclercia adecarboxylata Z96-1 [CP040889]
3251028
3251104
+
Arg
TCT
-
¡û
>C191221190
LR590464
Gammaproteobacteria
Leclercia adecarboxylata NCTC13032 [LR590464]
1122730
1122806
+
Arg
TCT
-
¡û
>W141710623
JMPM01000101
Gammaproteobacteria
Leclercia adecarboxylata ATCC 23216 = NBRC 102595 [JMPM]
35465
35541
+
Arg
TCT
[ENA]
¡û
>W1911577263
PDLK01000002
Gammaproteobacteria
Leclercia adecarboxylata FDAARGOS_404 [PDLK]
731428
731504
+
Arg
TCT
[ENA]
¡û
>W1810257769
PQJY01000001
Gammaproteobacteria
Leclercia sp. LSNIH8 [PQJY]
237519
237595
+
Arg
TCT
[ENA]
¡û
>W1810257933
PQKA01000002
Gammaproteobacteria
Leclercia sp. LSNIH6 [PQKA]
237519
237595
+
Arg
TCT
[ENA]
¡û
>W1810258037
PQKB01000004
Gammaproteobacteria
Leclercia sp. LSNIH5 [PQKB]
233728
233804
+
Arg
TCT
[ENA]
¡û
>W1810258110
PQKC01000003
Gammaproteobacteria
Leclercia sp. LSNIH2 [PQKC]
233955
234031
+
Arg
TCT
[ENA]
¡û
>W1810258205
PQKD01000006
Gammaproteobacteria
Leclercia sp. LSNIH7 [PQKD]
237519
237595
+
Arg
TCT
[ENA]
¡û
>W1810258232
PQKE01000001
Gammaproteobacteria
Leclercia sp. LSNIH4 [PQKE]
220561
220637
+
Arg
TCT
[ENA]
¡û
>W1810913889
QVNT01000002
Gammaproteobacteria
Leclercia adecarboxylata Palotina [QVNT]
576659
576583
-
Arg
TCT
[ENA]
¡û
>W1511481617
JWJV01000040
Gammaproteobacteria
Leclercia adecarboxylata KY2 [JWJV]
12851
12775
-
Arg
TCT
[ENA]
¡û
>C161063607
CP013990
Gammaproteobacteria
Leclercia adecarboxylata USDA-ARS-USMARC-60222 [CP013990]
3639761
3639685
-
Arg
TCT
-
¡û
>W1610062547
BCNP01000027
Gammaproteobacteria
Leclercia adecarboxylata ATCC 23216 = NBRC 102595 [BCNP]
164771
164847
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK