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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297745 (35 seq.)
>W1710861067
LMDJ01000012
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
184834
184758
-
Arg
TCT
[ENA]
¡û
>W1710862093
LMEC01000026
Betaproteobacteria
Massilia sp. Root418 [LMEC]
169224
169148
-
Arg
TCT
[ENA]
¡û
>W1710863117
LMEW01000012
Betaproteobacteria
Massilia sp. Root133 [LMEW]
510355
510431
+
Arg
TCT
[ENA]
¡û
>W1710864697
LMGB01000038
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
300284
300360
+
Arg
TCT
[ENA]
¡û
>W131219558
ATYR01000006
Betaproteobacteria
Massilia alkalitolerans DSM 17462 [ATYR]
146573
146649
+
Arg
TCT
[ENA]
¡û
>WENV180020644
FTCZ01007816
[FTCZ] metagenome; soil
2535
2611
+
Arg
TCT
[ENA]
¢þ
>WENV183726656
PJTO01000051
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
35207
35131
-
Arg
TCT
[ENA]
¢þ
>WENV183728484
PJTQ01000073
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
35212
35136
-
Arg
TCT
[ENA]
¢þ
>WENV183737287
PJUD01002920
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
2695
2771
+
Arg
TCT
[ENA]
¢þ
>WENV183740493
PJUF01002706
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
3142
3066
-
Arg
TCT
[ENA]
¢þ
>C181163933
CP028324
Betaproteobacteria
Pseudoduganella armeniaca ZMN-3 [CP028324]
2774676
2774752
+
Arg
TCT
-
¡û
>C181187778
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
2356713
2356637
-
Arg
TCT
-
¡û
>C191157321
CP038026
Betaproteobacteria
Pseudoduganella plicata DSM 17505 [CP038026]
5832253
5832329
+
Arg
TCT
-
¡û
>W141739268
JNNN01000069
Betaproteobacteria
Massilia sp. LC238 [JNNN]
26227
26303
+
Arg
TCT
[ENA]
¡û
>W141811326
JPXI01000039
Betaproteobacteria
Massilia sp. BSC265 consociata [JPXI]
156224
156148
-
Arg
TCT
[ENA]
¡û
>W141821345
JQNN01000001
Betaproteobacteria
Massilia sp. 9096 [JQNN]
832523
832599
+
Arg
TCT
[ENA]
¡û
>W1911619011
PPXQ01000022
Betaproteobacteria
Massilia sp. Mn16-1_5 [PPXQ]
55180
55256
+
Arg
TCT
[ENA]
¡û
>W1810330132
PUIP01000007
Betaproteobacteria
Massilia phosphatilytica 12-OD1 [PUIP]
8128
8052
-
Arg
TCT
[ENA]
¡û
>W1810486609
QAXZ01000005
Betaproteobacteria
Massilia sp. GV045 [QAXZ]
465455
465531
+
Arg
TCT
[ENA]
¡û
>W1810487110
QAYI01000003
Betaproteobacteria
Massilia sp. GV016 [QAYI]
188743
188667
-
Arg
TCT
[ENA]
¡û
>W1810672597
QJTN01000003
Betaproteobacteria
Massilia sp. GV024 [QJTN]
188743
188667
-
Arg
TCT
[ENA]
¡û
>C151092646
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
2409955
2409879
-
Arg
TCT
-
¡û
>W1511310194
JPQD01000013
Betaproteobacteria
Massilia sp. JS1662 [JPQD]
63507
63431
-
Arg
TCT
[ENA]
¡û
>W1511657403
LELH02000003
Betaproteobacteria
Massilia sp. WF1 [LELH]
3858
3934
+
Arg
TCT
[ENA]
¡û
>C161043168
CP012640
Betaproteobacteria
Massilia sp. WG5 [CP012640]
2460720
2460796
+
Arg
TCT
-
¡û
>W1610723413
LMDJ01000012
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
184834
184758
-
Arg
TCT
[ENA]
¡û
>W1610724439
LMEC01000026
Betaproteobacteria
Massilia sp. Root418 [LMEC]
169224
169148
-
Arg
TCT
[ENA]
¡û
>W1610725463
LMEW01000012
Betaproteobacteria
Massilia sp. Root133 [LMEW]
510355
510431
+
Arg
TCT
[ENA]
¡û
>W1610727043
LMGB01000038
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
300284
300360
+
Arg
TCT
[ENA]
¡û
>W1710512853
FMZS01000010
Betaproteobacteria
Massilia sp. PDC64 [FMZS]
18830
18906
+
Arg
TCT
[ENA]
¡û
>W1710515856
FNCD01000004
Betaproteobacteria
Duganella sp. OV458 [FNCD]
196499
196575
+
Arg
TCT
[ENA]
¡û
>W1710519306
FNEQ01000005
Betaproteobacteria
Duganella sp. OV510 [FNEQ]
263896
263820
-
Arg
TCT
[ENA]
¡û
>W1710545119
FOBG01000001
Betaproteobacteria
Duganella sp. CF402 [FOBG]
450854
450930
+
Arg
TCT
[ENA]
¡û
>W1710557569
FOLD01000002
Betaproteobacteria
Massilia yuzhufengensis [FOLD]
117641
117565
-
Arg
TCT
[ENA]
¡û
>W1710593021
FRCX01000007
Betaproteobacteria
Duganella sacchari [FRCX]
405321
405397
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK