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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297747 (13 seq.)
>C024099
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
22670
22743
+
Pro
TGG
[Ensembl]
¡û
>WENV170660032
JXWS01097505
[JXWS] soil metagenome; rice field; elevated CO2
300
226
-
Pro
TGG
[ENA]
¢þ
>C181192088
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
22893
22967
+
Pro
TGG
-
¡û
>C191072352
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
22915
22989
+
Pro
TGG
-
¡û
>C191072396
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
22921
22995
+
Pro
TGG
-
¡û
>C191072442
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
22965
23039
+
Pro
TGG
-
¡û
>C191072486
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
22921
22995
+
Pro
TGG
-
¡û
>C191072531
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
22918
22992
+
Pro
TGG
-
¡û
>W1910870027
NCQX01000001
Rhodothermota
Salinibacter ruber SP273 [NCQX]
12928
12854
-
Pro
TGG
[ENA]
¡û
>W1910870096
NCQY01000023
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
259435
259510
+
Pro
TGG
[ENA]
¡û
>W1910870153
NCQZ01000044
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
63918
63843
-
Pro
TGG
[ENA]
¡û
>W1910870172
NCRA01000005
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
27027
26952
-
Pro
TGG
[ENA]
¡û
>C131018218
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
22945
23019
+
Pro
TGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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