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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297762 (13 seq.)
>WENV170012724
ASRN01005558
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
342
266
-
Ile
GAT
[ENA]
¢þ
>WENV170012813
ASRO01005355
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
342
266
-
Ile
GAT
[ENA]
¢þ
>WENV170012897
ASRP01012442
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
342
266
-
Ile
GAT
[ENA]
¢þ
>WENV170012995
ASRQ01003644
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
342
266
-
Ile
GAT
[ENA]
¢þ
>WENV170014498
AYRG01004232
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
342
266
-
Ile
GAT
[ENA]
¢þ
>C181197028
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
168172
168248
+
Ile
GAT
-
¡û
>C181197036
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
251923
251999
+
Ile
GAT
-
¡û
>C181197042
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
2811896
2811820
-
Ile
GAT
-
¡û
>C181197047
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
2355972
2355896
-
Ile
GAT
-
¡û
>C181197054
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
2083299
2083223
-
Ile
GAT
-
¡û
>C181197064
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
2051820
2051744
-
Ile
GAT
-
¡û
>W1911426188
NXID01000015
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
875
799
-
Ile
GAT
[ENA]
¡û
>W1911576272
PDJW01000096
Campylobacterota
Malaciobacter mytili T234 [PDJW]
1884
1960
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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