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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297767 (55 seq.)
>W1710979362
LPNY01000158
Campylobacterota
Arcobacter sp. EP1 [LPNY]
249688
249612
-
Met
CAT
[ENA]
¡û
>WENV180381188
OBOR01162098
[OBOR] marine metagenome; ENVO 00002227
62
138
+
Met
CAT
[ENA]
¢þ
>C08000255
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
1854194
1854270
+
Met
CAT
[Ensembl]
¡û
>WENV182590586
OJIJ01000025
[OJIJ] seawater metagenome; Sea water
13602
13678
+
Met
CAT
[ENA]
¢þ
>WENV183709307
PDWI01026805
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4644
4720
+
Met
CAT
[ENA]
¢þ
>WENV183715224
PDWI01228410
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
16
92
+
Met
CAT
[ENA]
¢þ
>WENV183715637
PDWI01252148
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1040
1116
+
Met
CAT
[ENA]
¢þ
>WENV183718678
PDWJ01005819
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
9889
9813
-
Met
CAT
[ENA]
¢þ
>WENV183721028
PDWJ01052698
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1467
1543
+
Met
CAT
[ENA]
¢þ
>WENV170012764
ASRO01000188
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
230
154
-
Met
CAT
[ENA]
¢þ
>WENV170012826
ASRP01000089
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
9914
9990
+
Met
CAT
[ENA]
¢þ
>WENV170012948
ASRQ01000148
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
20664
20740
+
Met
CAT
[ENA]
¢þ
>WENV170013051
ASRR01001025
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
220
144
-
Met
CAT
[ENA]
¢þ
>WENV170014443
AYRG01000129
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
20664
20740
+
Met
CAT
[ENA]
¢þ
>WENV170635281
JDSF01000777
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
3578
3654
+
Met
CAT
[ENA]
¢þ
>WENV170635572
JDSG01000118
[JDSG] bioreactor metagenome; continuous culture bioreactor short generation time transfer1; day 52 after inoculation
21258
21334
+
Met
CAT
[ENA]
¢þ
>WENV170704299
LLEJ01002203
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
296
220
-
Met
CAT
[ENA]
¢þ
>WENV170780892
MAAB01027867
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
861
937
+
Met
CAT
[ENA]
¢þ
>C181197057
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
2057118
2057042
-
Met
CAT
-
¡û
>C181225252
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
1854187
1854263
+
Met
CAT
-
¡û
>C191084446
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
2260208
2260132
-
Met
CAT
-
¡û
>C191147194
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
1835929
1835853
-
Met
CAT
-
¡û
>C191178272
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
1813324
1813400
+
Met
CAT
-
¡û
>C191186416
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
2152149
2152073
-
Met
CAT
-
¡û
>C141005633
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
1734935
1735011
+
Met
CAT
[Ensembl]
¡û
>W1910810920
MUXF01000014
Campylobacterota
Arcobacter lacus RW43-9 [MUXF]
61795
61871
+
Met
CAT
[ENA]
¡û
>W1911200294
NREP01000016
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
29137
29213
+
Met
CAT
[ENA]
¡û
>W1911426209
NXID01000069
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
3521
3445
-
Met
CAT
[ENA]
¡û
>W1911426351
NXIG01000021
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
20213
20289
+
Met
CAT
[ENA]
¡û
>W1911426376
NXIH01000013
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
44495
44571
+
Met
CAT
[ENA]
¡û
>W1911426449
NXII01000031
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
2196
2272
+
Met
CAT
[ENA]
¡û
>W1911426483
NXIJ01000025
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
19454
19378
-
Met
CAT
[ENA]
¡û
>W1911576254
PDJW01000060
Campylobacterota
Malaciobacter mytili T234 [PDJW]
3541
3465
-
Met
CAT
[ENA]
¡û
>W1911576417
PDJZ01000016
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
32417
32493
+
Met
CAT
[ENA]
¡û
>W1911576807
PDKJ01000017
Campylobacterota
Halarcobacter ebronensis CECT 8993 [PDKJ]
20236
20160
-
Met
CAT
[ENA]
¡û
>W1911576853
PDKK01000018
Campylobacterota
Halarcobacter ebronensis CECT 8441 [PDKK]
9802
9726
-
Met
CAT
[ENA]
¡û
>W1911576976
PDKN01000008
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
18666
18742
+
Met
CAT
[ENA]
¡û
>W1911576989
PDKO01000001
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
488388
488312
-
Met
CAT
[ENA]
¡û
>W1911746049
QVQX01000009
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
62002
62078
+
Met
CAT
[ENA]
¡û
>W1911775184
QXMK01000012
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
22703
22627
-
Met
CAT
[ENA]
¡û
>W1911775372
QXNB01000014
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
18299
18375
+
Met
CAT
[ENA]
¡û
>C11100376
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
1737745
1737821
+
Met
CAT
[Ensembl]
¡û
>C11101066
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
2385308
2385232
-
Met
CAT
[Ensembl]
¡û
>W1510762843
JAIQ01000111
Campylobacterota
Aliarcobacter butzleri L348 [JAIQ]
14178
14254
+
Met
CAT
[ENA]
¡û
>W1510762880
JAIR01000059
Campylobacterota
Aliarcobacter butzleri L349 [JAIR]
14725
14801
+
Met
CAT
[ENA]
¡û
>W1510762911
JAIS01000080
Campylobacterota
Aliarcobacter butzleri L351 [JAIS]
10713
10637
-
Met
CAT
[ENA]
¡û
>W1510762948
JAIT01000062
Campylobacterota
Aliarcobacter butzleri L352 [JAIT]
6082
6006
-
Met
CAT
[ENA]
¡û
>W1510762966
JAIU01000034
Campylobacterota
Aliarcobacter butzleri L353 [JAIU]
14809
14885
+
Met
CAT
[ENA]
¡û
>W1510762994
JAIV01000067
Campylobacterota
Aliarcobacter butzleri L354 [JAIV]
14732
14808
+
Met
CAT
[ENA]
¡û
>W1510763042
JAIW01000070
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
15168
15244
+
Met
CAT
[ENA]
¡û
>W1510763067
JAIX01000074
Campylobacterota
Aliarcobacter butzleri L350 [JAIX]
10713
10637
-
Met
CAT
[ENA]
¡û
>W1511517391
JXXG01000002
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
593568
593644
+
Met
CAT
[ENA]
¡û
>W11143292
AEPT01000028
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
13719
13795
+
Met
CAT
[ENA]
¡û
>W11167761
AFNL01000023
Campylobacterota
Aliarcobacter butzleri 7h1h [AFNL]
48814
48890
+
Met
CAT
[ENA]
¡û
>W1610835353
LPNY01000158
Campylobacterota
Arcobacter sp. EP1 [LPNY]
249688
249612
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK