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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297790 (40 seq.)
>W1711350364
MCRI01000121
Gammaproteobacteria
Methylophaga muralis [MCRI]
109
184
+
Ala
TGC
[ENA]
¡û
>W1711350365
MCRI01000122
Gammaproteobacteria
Methylophaga muralis [MCRI]
107
182
+
Ala
TGC
[ENA]
¡û
>WENV180276980
OBHV01020566
[OBHV] metagenome; water
238
163
-
Ala
TGC
[ENA]
¢þ
>WENV181322821
OFKU01032321
[OFKU] marine metagenome; sea ice
453
378
-
Ala
TGC
[ENA]
¢þ
>WENV182566244
OJEJ01002904
[OJEJ] seawater metagenome; Sea water
122
197
+
Ala
TGC
[ENA]
¢þ
>WENV182574330
OJFR01004929
[OJFR] seawater metagenome; Sea water
876
951
+
Ala
TGC
[ENA]
¢þ
>WENV182576455
OJFX01028143
[OJFX] seawater metagenome; Sea water
842
767
-
Ala
TGC
[ENA]
¢þ
>WENV182579346
OJGS01006170
[OJGS] seawater metagenome; Sea water
2220
2145
-
Ala
TGC
[ENA]
¢þ
>WENV182580735
OJGW01009924
[OJGW] seawater metagenome; Sea water
748
823
+
Ala
TGC
[ENA]
¢þ
>WENV182584780
OJHG01010180
[OJHG] seawater metagenome; Sea water
1392
1317
-
Ala
TGC
[ENA]
¢þ
>WENV183056841
OLHJ01031910
[OLHJ] seawater metagenome; Sea water
631
556
-
Ala
TGC
[ENA]
¢þ
>WENV183057588
OLHL01013230
[OLHL] seawater metagenome; Sea water
53
128
+
Ala
TGC
[ENA]
¢þ
>WENV183615344
OOEB01006075
[OOEB] marine metagenome; sea ice
435
360
-
Ala
TGC
[ENA]
¢þ
>WENV183615966
OOEC01011073
[OOEC] marine metagenome; sea ice
290
215
-
Ala
TGC
[ENA]
¢þ
>WENV183616839
OOEE01003644
[OOEE] marine metagenome; sea ice
1209
1134
-
Ala
TGC
[ENA]
¢þ
>WENV183617560
OOEG01008807
[OOEG] marine metagenome; sea ice
984
909
-
Ala
TGC
[ENA]
¢þ
>WENV183621383
OOFU01000046
[OOFU] marine metagenome; sea ice
11591
11516
-
Ala
TGC
[ENA]
¢þ
>WENV183622963
OOFX01000004
[OOFX] marine metagenome; sea ice
6098
6023
-
Ala
TGC
[ENA]
¢þ
>WENV183623390
OOFY01005757
[OOFY] marine metagenome; sea ice
196
271
+
Ala
TGC
[ENA]
¢þ
>WENV183624291
OOGD01000334
[OOGD] marine metagenome; sea ice
583
658
+
Ala
TGC
[ENA]
¢þ
>WENV183624931
OOGE01039829
[OOGE] marine metagenome; sea ice
260
185
-
Ala
TGC
[ENA]
¢þ
>WENV183625834
OOGG01046627
[OOGG] marine metagenome; sea ice
257
332
+
Ala
TGC
[ENA]
¢þ
>WENV183627973
OOGM01000118
[OOGM] marine metagenome; sea ice
2346
2271
-
Ala
TGC
[ENA]
¢þ
>WENV183628503
OOGO01000196
[OOGO] marine metagenome; sea ice
6328
6253
-
Ala
TGC
[ENA]
¢þ
>WENV183630749
OOGU01001495
[OOGU] marine metagenome; sea ice
3098
3173
+
Ala
TGC
[ENA]
¢þ
>WENV170120800
CENL01005026
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
313
388
+
Ala
TGC
[ENA]
¢þ
>WENV170155221
CEOG01003308
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
313
388
+
Ala
TGC
[ENA]
¢þ
>WENV170228490
CEQG01015086
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
419
494
+
Ala
TGC
[ENA]
¢þ
>WENV170265808
CERE01015576
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
313
388
+
Ala
TGC
[ENA]
¢þ
>WENV170673312
LAZR01011181
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
1714
1789
+
Ala
TGC
[ENA]
¢þ
>WENV170673324
LAZR01011557
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
212
287
+
Ala
TGC
[ENA]
¢þ
>WENV170673696
LAZR01023324
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
1975
1900
-
Ala
TGC
[ENA]
¢þ
>C10110496
CP001790
Gammaproteobacteria
Pectobacterium parmentieri WPP163 [CP001790]
1229285
1229360
+
Ala
TGC
[Ensembl]
¡û
>W11163826
AFIG01000001
Gammaproteobacteria
Methylophaga aminisulfidivorans MP [AFIG]
829926
830001
+
Ala
TGC
[ENA]
¡û
>C121011859
CP003380
Gammaproteobacteria
Methylophaga frappieri JAM7 [CP003380]
2415966
2416041
+
Ala
TGC
[Ensembl]
¡û
>C121011869
CP003380
Gammaproteobacteria
Methylophaga frappieri JAM7 [CP003380]
1725414
1725339
-
Ala
TGC
[Ensembl]
¡û
>C121011876
CP003380
Gammaproteobacteria
Methylophaga frappieri JAM7 [CP003380]
1025238
1025163
-
Ala
TGC
[Ensembl]
¡û
>C121012124
CP003390
Gammaproteobacteria
Methylophaga nitratireducenticrescens JAM1 [CP003390]
3135230
3135155
-
Ala
TGC
[Ensembl]
¡û
>C121012130
CP003390
Gammaproteobacteria
Methylophaga nitratireducenticrescens JAM1 [CP003390]
2595873
2595798
-
Ala
TGC
[Ensembl]
¡û
>C121012136
CP003390
Gammaproteobacteria
Methylophaga nitratireducenticrescens JAM1 [CP003390]
2362624
2362549
-
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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