This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29780 (39 seq.)
>W1710867083
LMHZ01000015
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
14725
14636
-
Ser
TGA
[ENA]
¡û
>W131045992
AMSA01000002
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os45 [AMSA]
106774
106685
-
Ser
TGA
[ENA]
¡û
>W131046067
AMSB01000003
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
430902
430991
+
Ser
TGA
[ENA]
¡û
>W131062292
ANJR01000025
Betaproteobacteria
Herbaspirillum huttiense subsp. putei IAM 15032 [ANJR]
1333600
1333689
+
Ser
TGA
[ENA]
¡û
>W1711430728
MIJG01000008
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
1137421
1137510
+
Ser
TGA
[ENA]
¡û
>W1712110297
NJGV01000001
Betaproteobacteria
Herbaspirillum aquaticum [NJGV]
315786
315697
-
Ser
TGA
[ENA]
¡û
>C171021212
CP013136
Betaproteobacteria
Herbaspirillum seropedicae AU14040 [CP013136]
3135739
3135828
+
Ser
TGA
-
¡û
>W141003828
AEEC02000018
Betaproteobacteria
Herbaspirillum frisingense GSF30 [AEEC]
113155
113244
+
Ser
TGA
[ENA]
¡û
>W141223415
BADF01000970
Betaproteobacteria
Herbaspirillum sp. B39 [BADF]
15874
15785
-
Ser
TGA
[ENA]
¡û
>W141223495
BADI01000422
Betaproteobacteria
Herbaspirillum sp. B65 [BADI]
6837
6748
-
Ser
TGA
[ENA]
¡û
>W141223549
BADJ01001276
Betaproteobacteria
Herbaspirillum sp. B501 [BADJ]
1787
1698
-
Ser
TGA
[ENA]
¡û
>WENV183727295
PJTO01023927
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
512
423
-
Ser
TGA
[ENA]
¢þ
>WENV183727819
PJTP01000754
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
1481
1392
-
Ser
TGA
[ENA]
¢þ
>WENV183734938
PJUA01000192
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
19878
19967
+
Ser
TGA
[ENA]
¢þ
>WENV183735892
PJUB01008899
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
581
670
+
Ser
TGA
[ENA]
¢þ
>WENV183736548
PJUC01011916
[PJUC] soil metagenome; Soil enriched on filter paper
604
693
+
Ser
TGA
[ENA]
¢þ
>WENV183744381
PJUK01014251
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
285
196
-
Ser
TGA
[ENA]
¢þ
>ENV08001392
ABMX01009352
fish metagenome; microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease
100
11
-
Ser
TGA
[ENA]
¡û
>WENV170165102
CEON01070741
[CEON] marine metagenome genome assembly TARA_034_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
894
805
-
Ser
TGA
[ENA]
¢þ
>WENV170201614
CEPQ01037912
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1315
1226
-
Ser
TGA
[ENA]
¢þ
>C191029343
CP024996
Betaproteobacteria
Herbaspirillum rubrisubalbicans DSM 11543 [CP024996]
3396439
3396528
+
Ser
TGA
-
¡û
>C191124239
CP034395
Betaproteobacteria
Herbaspirillum seropedicae AU13965 [CP034395]
3101616
3101705
+
Ser
TGA
-
¡û
>C191138936
CP035311
Betaproteobacteria
Janthinobacterium sp. 17J80-10 [CP035311]
2866121
2866032
-
Ser
TGA
-
¡û
>W1910577868
JUGD01000019
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os38 [JUGD]
690
601
-
Ser
TGA
[ENA]
¡û
>W1910578295
JWJC01000013
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
101533
101622
+
Ser
TGA
[ENA]
¡û
>W1911802774
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
1555603
1555692
+
Ser
TGA
[ENA]
¡û
>W1911802881
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sedimenti K1S02-23 [QYUQ]
207392
207481
+
Ser
TGA
[ENA]
¡û
>SRA1001461
SRR001065.21347
Tilapia Farm, microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000153)
100
11
-
Ser
TGA
[SRA]
>W1810194029
PKOI01000003
Betaproteobacteria
Herbaspirillum sp. BH-1 [PKOI]
335868
335779
-
Ser
TGA
[ENA]
¡û
>C151087575
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
3202114
3202203
+
Ser
TGA
[Ensembl]
¡û
>C10107810
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
3201588
3201677
+
Ser
TGA
[Ensembl]
¡û
>W1511683840
LFLT01000029
Betaproteobacteria
Herbaspirillum chlorophenolicum CPW301 [LFLT]
57711
57800
+
Ser
TGA
[ENA]
¡û
>C161060448
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
3305508
3305597
+
Ser
TGA
[Ensembl]
¡û
>W1610070420
BCTG01000003
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
267192
267103
-
Ser
TGA
[ENA]
¡û
>W1610071847
BCUJ01000015
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
99271
99182
-
Ser
TGA
[ENA]
¡û
>W121068698
AJVC01000003
Betaproteobacteria
Herbaspirillum sp. GW103 [AJVC]
1612689
1612778
+
Ser
TGA
[ENA]
¡û
>W1610729429
LMHZ01000015
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
14725
14636
-
Ser
TGA
[ENA]
¡û
>W1710067793
BCTG01000003
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
267192
267103
-
Ser
TGA
[ENA]
¡û
>W1710069049
BCUJ01000015
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
99271
99182
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK