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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297870 (63 seq.)
>W1710797599
LJTB01000031
Gammaproteobacteria
Pseudoalteromonas sp. UCD-33C [LJTB]
169
245
+
Ile
GAT
[ENA]
¡û
>W1710797601
LJTB01000032
Gammaproteobacteria
Pseudoalteromonas sp. UCD-33C [LJTB]
169
245
+
Ile
GAT
[ENA]
¡û
>W1710797705
LJTC01000054
Gammaproteobacteria
Pseudoalteromonas lipolytica [LJTC]
419
343
-
Ile
GAT
[ENA]
¡û
>W1710797707
LJTC01000066
Gammaproteobacteria
Pseudoalteromonas lipolytica [LJTC]
166
242
+
Ile
GAT
[ENA]
¡û
>W1710808893
LKDX01000175
Gammaproteobacteria
Pseudoalteromonas sp. P1-26 [LKDX]
258
182
-
Ile
GAT
[ENA]
¡û
>W1710808907
LKDX01000216
Gammaproteobacteria
Pseudoalteromonas sp. P1-26 [LKDX]
191
115
-
Ile
GAT
[ENA]
¡û
>W1710943683
LOPY01000017
Gammaproteobacteria
Pseudoalteromonas sp. XI10 [LOPY]
259
183
-
Ile
GAT
[ENA]
¡û
>W1711054923
LRUE01000017
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis [LRUE]
2503
2427
-
Ile
GAT
[ENA]
¡û
>W1711054988
LRUF01000022
Gammaproteobacteria
Pseudoalteromonas arabiensis [LRUF]
1623
1699
+
Ile
GAT
[ENA]
¡û
>W1711175940
LWFC01000230
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis [LWFC]
735
659
-
Ile
GAT
[ENA]
¡û
>W1711175947
LWFC01000264
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis [LWFC]
334
258
-
Ile
GAT
[ENA]
¡û
>W1711175984
LWFC01001643
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis [LWFC]
144
68
-
Ile
GAT
[ENA]
¡û
>W1711252903
LYPI01000005
Gammaproteobacteria
Pseudoalteromonas sp. PAB 2.2 [LYPI]
575
499
-
Ile
GAT
[ENA]
¡û
>C016502
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
1822
1898
+
Ile
GAT
[Ensembl]
¡û
>C016508
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
298420
298496
+
Ile
GAT
[Ensembl]
¡û
>C016513
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
742633
742709
+
Ile
GAT
[Ensembl]
¡û
>WENV180042630
LQAF01015467
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
307
231
-
Ile
GAT
[ENA]
¢þ
>WENV180593676
OCOX01136990
[OCOX] marine metagenome; ENVO:00002010
116
192
+
Ile
GAT
[ENA]
¢þ
>WENV183808115
PVBE011264274
[PVBE] marine metagenome; water
621
545
-
Ile
GAT
[ENA]
¢þ
>W141402228
JDVB01000010
Gammaproteobacteria
Pseudoalteromonas lipolytica SCSIO 04301 [JDVB]
425950
425874
-
Ile
GAT
[ENA]
¡û
>C181169211
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
24677
24753
+
Ile
GAT
-
¡û
>C181169228
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
309248
309324
+
Ile
GAT
-
¡û
>C181169272
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
4525560
4525484
-
Ile
GAT
-
¡û
>C191084141
CP032090
Gammaproteobacteria
Pseudoalteromonas donghaensis HJ51 [CP032090]
94824
94900
+
Ile
GAT
-
¡û
>C191084146
CP032090
Gammaproteobacteria
Pseudoalteromonas donghaensis HJ51 [CP032090]
388956
389032
+
Ile
GAT
-
¡û
>W09105779
AAQS01000003
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
155030
155106
+
Ile
GAT
[ENA]
¡û
>W09105822
AAQS01000032
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
986
1062
+
Ile
GAT
[ENA]
¡û
>W09105825
AAQS01000034
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
618
694
+
Ile
GAT
[ENA]
¡û
>W1911179122
NQMR01000244
Gammaproteobacteria
Pseudoalteromonas sp. NBT06-2 [NQMR]
119
43
-
Ile
GAT
[ENA]
¡û
>W1911798930
QYSE01000016
Gammaproteobacteria
Pseudoalteromonas profundi MNAD 1.6 [QYSE]
179
255
+
Ile
GAT
[ENA]
¡û
>W1911811063
QZCH01000058
Gammaproteobacteria
Motilimonas pumila PLHSC7-2 [QZCH]
60
136
+
Ile
GAT
[ENA]
¡û
>W1810156925
PJBP01000038
Gammaproteobacteria
Psychromonas sp. MB-3u-54 [PJBP]
402
326
-
Ile
GAT
[ENA]
¡û
>W1810248975
PQBX01000009
Gammaproteobacteria
Pseudoalteromonas sp. T1lg21 [PQBX]
119
195
+
Ile
GAT
[ENA]
¡û
>W1810249813
PQCG01000012
Gammaproteobacteria
Pseudoalteromonas sp. T1lg122 [PQCG]
8
84
+
Ile
GAT
[ENA]
¡û
>W1810249823
PQCG01000027
Gammaproteobacteria
Pseudoalteromonas sp. T1lg122 [PQCG]
374
298
-
Ile
GAT
[ENA]
¡û
>W1810249825
PQCG01000028
Gammaproteobacteria
Pseudoalteromonas sp. T1lg122 [PQCG]
119
195
+
Ile
GAT
[ENA]
¡û
>W1810471898
QAGM01000058
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
214
290
+
Ile
GAT
[ENA]
¡û
>W1810471900
QAGM01000059
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
621
545
-
Ile
GAT
[ENA]
¡û
>W1810471905
QAGM01000070
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
216
292
+
Ile
GAT
[ENA]
¡û
>W1810758134
QPID01000025
Gammaproteobacteria
Corallincola holothuriorum C4 [QPID]
84
8
-
Ile
GAT
[ENA]
¡û
>W1810779465
QQOH01000013
Gammaproteobacteria
Motiliproteus coralliicola C34 [QQOH]
460
384
-
Ile
GAT
[ENA]
¡û
>C11109028
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
40981
41057
+
Ile
GAT
[Ensembl]
¡û
>C11109035
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
333938
334014
+
Ile
GAT
[Ensembl]
¡û
>C11109111
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
2655887
2655811
-
Ile
GAT
[Ensembl]
¡û
>W121025047
AHCA01000055
Gammaproteobacteria
Pseudoalteromonas haloplanktis ATCC 14393 [AHCA]
426
350
-
Ile
GAT
[ENA]
¡û
>WENV067112
AACY023675929
Marine microbial communities from Global Ocean Sampling (GOS)
517
595
+
Ile
GAT
[ENA]
>W1610620903
LHPH01000072
Gammaproteobacteria
Pseudoalteromonas porphyrae [LHPH]
533
457
-
Ile
GAT
[ENA]
¡û
>W1610635651
LITL01000057
Gammaproteobacteria
Pseudoalteromonas porphyrae [LITL]
806
730
-
Ile
GAT
[ENA]
¡û
>W1610661556
LJTB01000031
Gammaproteobacteria
Pseudoalteromonas sp. UCD-33C [LJTB]
169
245
+
Ile
GAT
[ENA]
¡û
>W1610661558
LJTB01000032
Gammaproteobacteria
Pseudoalteromonas sp. UCD-33C [LJTB]
169
245
+
Ile
GAT
[ENA]
¡û
>W1610661662
LJTC01000054
Gammaproteobacteria
Pseudoalteromonas lipolytica [LJTC]
419
343
-
Ile
GAT
[ENA]
¡û
>W1610661664
LJTC01000066
Gammaproteobacteria
Pseudoalteromonas lipolytica [LJTC]
166
242
+
Ile
GAT
[ENA]
¡û
>W1610672997
LKDX01000175
Gammaproteobacteria
Pseudoalteromonas sp. P1-26 [LKDX]
258
182
-
Ile
GAT
[ENA]
¡û
>W1610673011
LKDX01000216
Gammaproteobacteria
Pseudoalteromonas sp. P1-26 [LKDX]
191
115
-
Ile
GAT
[ENA]
¡û
>W1610799983
LOPY01000017
Gammaproteobacteria
Pseudoalteromonas sp. XI10 [LOPY]
259
183
-
Ile
GAT
[ENA]
¡û
>W1610895969
LRUE01000017
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis [LRUE]
2503
2427
-
Ile
GAT
[ENA]
¡û
>W1610896034
LRUF01000022
Gammaproteobacteria
Pseudoalteromonas arabiensis [LRUF]
1623
1699
+
Ile
GAT
[ENA]
¡û
>W1610984253
LWFC01000230
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis [LWFC]
735
659
-
Ile
GAT
[ENA]
¡û
>W1610984260
LWFC01000264
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis [LWFC]
334
258
-
Ile
GAT
[ENA]
¡û
>W1610984297
LWFC01001643
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis [LWFC]
144
68
-
Ile
GAT
[ENA]
¡û
>ENV002919
AY934371
Environmental sample from ENV division of INSDC
117
195
+
Ile
GAT
[ENA]
>W1710748770
LHPH01000072
Gammaproteobacteria
Pseudoalteromonas porphyrae [LHPH]
533
457
-
Ile
GAT
[ENA]
¡û
>W1710770279
LITL01000057
Gammaproteobacteria
Pseudoalteromonas porphyrae [LITL]
806
730
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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