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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297905 (105 seq.)
>W1710915912
LNUP01000018
Gammaproteobacteria
Pseudomonas sp. EpS/L25 [LNUP]
19616
19692
+
Asp
GTC
[ENA]
¡û
>W1711076401
LSLE01000033
Gammaproteobacteria
Pseudomonas mosselii [LSLE]
141426
141350
-
Asp
GTC
[ENA]
¡û
>W1711076413
LSLE01000063
Gammaproteobacteria
Pseudomonas mosselii [LSLE]
302472
302548
+
Asp
GTC
[ENA]
¡û
>W1711173230
LWCR01000088
Gammaproteobacteria
Pseudomonas oryzihabitans [LWCR]
120557
120481
-
Asp
GTC
[ENA]
¡û
>W1711268253
LZCV01000010
Gammaproteobacteria
Pseudomonas mosselii [LZCV]
124994
124918
-
Asp
GTC
[ENA]
¡û
>W1711268284
LZCV01000039
Gammaproteobacteria
Pseudomonas mosselii [LZCV]
5288
5212
-
Asp
GTC
[ENA]
¡û
>W1711679853
MRVJ01000011
Gammaproteobacteria
Pseudomonas mosselii [MRVJ]
135535
135459
-
Asp
GTC
[ENA]
¡û
>W1711679872
MRVJ01000053
Gammaproteobacteria
Pseudomonas mosselii [MRVJ]
13394
13470
+
Asp
GTC
[ENA]
¡û
>W1711723439
MTLN01000008
Gammaproteobacteria
Pseudomonas psychrotolerans [MTLN]
959602
959678
+
Asp
GTC
[ENA]
¡û
>W1712096787
NIBE01000102
Gammaproteobacteria
Pseudomonas sp. DrBHI1 [NIBE]
55980
56056
+
Asp
GTC
[ENA]
¡û
>W1712096797
NIBE01000133
Gammaproteobacteria
Pseudomonas sp. DrBHI1 [NIBE]
46392
46316
-
Asp
GTC
[ENA]
¡û
>C171083171
CP018758
Gammaproteobacteria
Pseudomonas psychrotolerans PRS08-11306 [CP018758]
807418
807342
-
Asp
GTC
-
¡û
>W131055641
ANBZ01000071
Gammaproteobacteria
Pseudomonas sp. 313 [ANBZ]
122235
122159
-
Asp
GTC
[ENA]
¡û
>C016147
CT573326
Gammaproteobacteria
Pseudomonas entomophila L48 [CT573326]
1472285
1472361
+
Asp
GTC
[Ensembl]
¡û
>C016161
CT573326
Gammaproteobacteria
Pseudomonas entomophila L48 [CT573326]
1767659
1767735
+
Asp
GTC
[Ensembl]
¡û
>W141168011
AXUO01000553
Gammaproteobacteria
Pseudomonas mosselii SJ10 [AXUO]
1493
1569
+
Asp
GTC
[ENA]
¡û
>W141168021
AXUO01001149
Gammaproteobacteria
Pseudomonas mosselii SJ10 [AXUO]
1199
1275
+
Asp
GTC
[ENA]
¡û
>W141207628
AZNY01000002
Gammaproteobacteria
Pseudomonas sp. MOIL14HWK12:I1 [AZNY]
436804
436880
+
Asp
GTC
[ENA]
¡û
>W141207728
AZOA01000001
Gammaproteobacteria
Pseudomonas sp. MOIL14HWK12:I2 [AZOA]
618753
618677
-
Asp
GTC
[ENA]
¡û
>W141207786
AZOB01000002
Gammaproteobacteria
Pseudomonas oleovorans MOIL14HWK12 [AZOB]
436700
436776
+
Asp
GTC
[ENA]
¡û
>W141236929
BBIT01000002
Gammaproteobacteria
Pseudomonas oryzihabitans NBRC 102199 [BBIT]
379744
379820
+
Asp
GTC
[ENA]
¡û
>WENV170001753
AGFS01142849
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
363
287
-
Asp
GTC
[ENA]
¢þ
>C181078690
CP023299
Gammaproteobacteria
Pseudomonas mosselii BS011 [CP023299]
1505842
1505766
-
Asp
GTC
-
¡û
>C181078706
CP023299
Gammaproteobacteria
Pseudomonas mosselii BS011 [CP023299]
916248
916172
-
Asp
GTC
-
¡û
>C181096302
CP024159
Gammaproteobacteria
Pseudomonas mosselii PtA1 [CP024159]
1199979
1200055
+
Asp
GTC
-
¡û
>C181096318
CP024159
Gammaproteobacteria
Pseudomonas mosselii PtA1 [CP024159]
1797792
1797868
+
Asp
GTC
-
¡û
>C181133212
CP026386
Gammaproteobacteria
Pseudomonas sp. PONIH3 [CP026386]
5579067
5579143
+
Asp
GTC
-
¡û
>C181133241
CP026386
Gammaproteobacteria
Pseudomonas sp. PONIH3 [CP026386]
2309122
2309046
-
Asp
GTC
-
¡û
>C191123297
CP034337
Gammaproteobacteria
Pseudomonas oryziphila 2014 [CP034337]
1403433
1403509
+
Asp
GTC
-
¡û
>C191123311
CP034337
Gammaproteobacteria
Pseudomonas oryziphila 2014 [CP034337]
1745894
1745970
+
Asp
GTC
-
¡û
>C191123371
CP034338
Gammaproteobacteria
Pseudomonas oryziphila 1257 [CP034338]
1470292
1470368
+
Asp
GTC
-
¡û
>C191123385
CP034338
Gammaproteobacteria
Pseudomonas oryziphila 1257 [CP034338]
1765318
1765394
+
Asp
GTC
-
¡û
>C191147675
CP035952
Gammaproteobacteria
Pseudomonas tructae SNU WT1 [CP035952]
4289574
4289498
-
Asp
GTC
-
¡û
>W141561988
JHYW01000012
Gammaproteobacteria
Pseudomonas mosselii DSM 17497 [JHYW]
125268
125192
-
Asp
GTC
[ENA]
¡û
>W141561998
JHYW01000016
Gammaproteobacteria
Pseudomonas mosselii DSM 17497 [JHYW]
36674
36750
+
Asp
GTC
[ENA]
¡û
>W1810211246
POHX01000001
Gammaproteobacteria
Pseudomonas sp. DP16D-E2 [POHX]
259622
259546
-
Asp
GTC
[ENA]
¡û
>W1810211292
POHX01000064
Gammaproteobacteria
Pseudomonas sp. DP16D-E2 [POHX]
6550
6474
-
Asp
GTC
[ENA]
¡û
>W1810211307
POHY01000001
Gammaproteobacteria
Pseudomonas sp. FW305-42 [POHY]
21840
21916
+
Asp
GTC
[ENA]
¡û
>W1810211369
POHZ01000002
Gammaproteobacteria
Pseudomonas sp. MPR-R1B [POHZ]
21819
21895
+
Asp
GTC
[ENA]
¡û
>W1810211418
POHZ01000063
Gammaproteobacteria
Pseudomonas sp. MPR-R1B [POHZ]
6355
6279
-
Asp
GTC
[ENA]
¡û
>W1810211443
POIA01000006
Gammaproteobacteria
Pseudomonas sp. GW531-E2 [POIA]
193112
193036
-
Asp
GTC
[ENA]
¡û
>W1810211483
POIA01000058
Gammaproteobacteria
Pseudomonas sp. GW531-E2 [POIA]
13147
13223
+
Asp
GTC
[ENA]
¡û
>W1810211509
POIB01000004
Gammaproteobacteria
Pseudomonas sp. FW305-127 [POIB]
259624
259548
-
Asp
GTC
[ENA]
¡û
>W1810211547
POIB01000061
Gammaproteobacteria
Pseudomonas sp. FW305-127 [POIB]
13160
13236
+
Asp
GTC
[ENA]
¡û
>W1810211564
POIC01000002
Gammaproteobacteria
Pseudomonas sp. FW305-17 [POIC]
259165
259089
-
Asp
GTC
[ENA]
¡û
>W1810211615
POIC01000061
Gammaproteobacteria
Pseudomonas sp. FW305-17 [POIC]
6550
6474
-
Asp
GTC
[ENA]
¡û
>W1810501432
QBIZ02000034
Gammaproteobacteria
Pseudomonas sp. RIT 411 [QBIZ]
10335
10411
+
Asp
GTC
[ENA]
¡û
>W1810580756
QETK01000015
Gammaproteobacteria
Pseudomonas sp. SDI [QETK]
28166
28090
-
Asp
GTC
[ENA]
¡û
>W1810580765
QETK01000025
Gammaproteobacteria
Pseudomonas sp. SDI [QETK]
65137
65061
-
Asp
GTC
[ENA]
¡û
>W1810670080
QJRO01000002
Gammaproteobacteria
Pseudomonas soli LBp-160603 [QJRO]
135156
135232
+
Asp
GTC
[ENA]
¡û
>W1810670135
QJRO01000037
Gammaproteobacteria
Pseudomonas soli LBp-160603 [QJRO]
13183
13259
+
Asp
GTC
[ENA]
¡û
>W1810670161
QJRP01000010
Gammaproteobacteria
Pseudomonas mosselii LB-090624 [QJRP]
127729
127805
+
Asp
GTC
[ENA]
¡û
>W1810670198
QJRP01000055
Gammaproteobacteria
Pseudomonas mosselii LB-090624 [QJRP]
6920
6844
-
Asp
GTC
[ENA]
¡û
>W1810670224
QJRQ01000007
Gammaproteobacteria
Pseudomonas soli 57B-090714 [QJRQ]
126606
126682
+
Asp
GTC
[ENA]
¡û
>W1810670263
QJRQ01000040
Gammaproteobacteria
Pseudomonas soli 57B-090714 [QJRQ]
6567
6491
-
Asp
GTC
[ENA]
¡û
>W1810682889
QKVM01000011
Gammaproteobacteria
Pseudomonas sichuanensis WCHPs060039 [QKVM]
80469
80545
+
Asp
GTC
[ENA]
¡û
>W1810682913
QKVM01000055
Gammaproteobacteria
Pseudomonas sichuanensis WCHPs060039 [QKVM]
9550
9626
+
Asp
GTC
[ENA]
¡û
>W1810685205
QKZD01000001
Gammaproteobacteria
Pseudomonas sp. 2848 [QKZD]
467779
467855
+
Asp
GTC
[ENA]
¡û
>W1810685237
QKZD01000007
Gammaproteobacteria
Pseudomonas sp. 2848 [QKZD]
396824
396900
+
Asp
GTC
[ENA]
¡û
>W1810787073
QRDL01000002
Gammaproteobacteria
Pseudomonas oleovorans AG1002 [QRDL]
313748
313824
+
Asp
GTC
[ENA]
¡û
>SRA1015248
SRR023845.519296
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
266
190
-
Asp
GTC
[SRA]
>C151049957
CP009365
Gammaproteobacteria
Pseudomonas soli SJ10 [CP009365]
117468
117544
+
Asp
GTC
[Ensembl]
¡û
>C151050016
CP009365
Gammaproteobacteria
Pseudomonas soli SJ10 [CP009365]
3173958
3173882
-
Asp
GTC
[Ensembl]
¡û
>C151104881
LN847264
Gammaproteobacteria
Pseudomonas sp. CCOS 191 [LN847264]
4752770
4752694
-
Asp
GTC
[Ensembl]
¡û
>C151104891
LN847264
Gammaproteobacteria
Pseudomonas sp. CCOS 191 [LN847264]
4126941
4126865
-
Asp
GTC
[Ensembl]
¡û
>WENV11101825
AGFS01142849
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
363
287
-
Asp
GTC
[ENA]
¡û
>W1511013685
JHEE01000030
Gammaproteobacteria
Pseudomonas sp. 250J [JHEE]
121160
121236
+
Asp
GTC
[ENA]
¡û
>W1511013708
JHEE01000061
Gammaproteobacteria
Pseudomonas sp. 250J [JHEE]
13289
13365
+
Asp
GTC
[ENA]
¡û
>W1511530665
JYKV01000018
Gammaproteobacteria
Pseudomonas oryzihabitans RIT370 [JYKV]
27869
27793
-
Asp
GTC
[ENA]
¡û
>C161071534
CP014343
Gammaproteobacteria
Pseudomonas putida 1A00316 [CP014343]
1203791
1203867
+
Asp
GTC
[Ensembl]
¡û
>C161071550
CP014343
Gammaproteobacteria
Pseudomonas putida 1A00316 [CP014343]
1770888
1770964
+
Asp
GTC
[Ensembl]
¡û
>W121023807
AHBD01000001
Gammaproteobacteria
Pseudomonas psychrotolerans L19 [AHBD]
297684
297608
-
Asp
GTC
[ENA]
¡û
>W1610592122
LDSO01000029
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSO]
50228
50304
+
Asp
GTC
[ENA]
¡û
>W1610592151
LDSP01000003
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSP]
117459
117383
-
Asp
GTC
[ENA]
¡û
>W1610592259
LDSQ01000079
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSQ]
156
80
-
Asp
GTC
[ENA]
¡û
>W1610592291
LDSR01000031
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSR]
17136
17060
-
Asp
GTC
[ENA]
¡û
>W1610592368
LDSS01000059
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSS]
142
66
-
Asp
GTC
[ENA]
¡û
>W1610592385
LDST01000012
Gammaproteobacteria
Pseudomonas psychrotolerans [LDST]
107293
107217
-
Asp
GTC
[ENA]
¡û
>W1610592485
LDSU01000069
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSU]
4006
3930
-
Asp
GTC
[ENA]
¡û
>W1610592499
LDSV01000012
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSV]
119929
119853
-
Asp
GTC
[ENA]
¡û
>W1610592548
LDSW01000003
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSW]
54889
54813
-
Asp
GTC
[ENA]
¡û
>W1610592636
LDSX01000028
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSX]
118670
118594
-
Asp
GTC
[ENA]
¡û
>W1610592675
LDSY01000011
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSY]
55920
55844
-
Asp
GTC
[ENA]
¡û
>W1610592761
LDSZ01000038
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSZ]
45787
45863
+
Asp
GTC
[ENA]
¡û
>W1610592803
LDTA01000029
Gammaproteobacteria
Pseudomonas psychrotolerans [LDTA]
118685
118609
-
Asp
GTC
[ENA]
¡û
>W1610774151
LNUP01000018
Gammaproteobacteria
Pseudomonas sp. EpS/L25 [LNUP]
19616
19692
+
Asp
GTC
[ENA]
¡û
>W1610915706
LSLE01000033
Gammaproteobacteria
Pseudomonas mosselii [LSLE]
141426
141350
-
Asp
GTC
[ENA]
¡û
>W1610915718
LSLE01000063
Gammaproteobacteria
Pseudomonas mosselii [LSLE]
302472
302548
+
Asp
GTC
[ENA]
¡û
>W1610981835
LWCR01000088
Gammaproteobacteria
Pseudomonas oryzihabitans [LWCR]
120557
120481
-
Asp
GTC
[ENA]
¡û
>W1710508382
FMWB01000001
Gammaproteobacteria
Pseudomonas psychrotolerans [FMWB]
315084
315008
-
Asp
GTC
[ENA]
¡û
>W1710548925
FOED01000002
Gammaproteobacteria
Pseudomonas sp. Snoq117.2 [FOED]
333105
333029
-
Asp
GTC
[ENA]
¡û
>W1710549587
FOEQ01000001
Gammaproteobacteria
Pseudomonas soli [FOEQ]
485339
485263
-
Asp
GTC
[ENA]
¡û
>W1710711402
LDSO01000029
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSO]
50228
50304
+
Asp
GTC
[ENA]
¡û
>W1710711431
LDSP01000003
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSP]
117459
117383
-
Asp
GTC
[ENA]
¡û
>W1710711539
LDSQ01000079
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSQ]
156
80
-
Asp
GTC
[ENA]
¡û
>W1710711571
LDSR01000031
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSR]
17136
17060
-
Asp
GTC
[ENA]
¡û
>W1710711648
LDSS01000059
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSS]
142
66
-
Asp
GTC
[ENA]
¡û
>W1710711665
LDST01000012
Gammaproteobacteria
Pseudomonas psychrotolerans [LDST]
107293
107217
-
Asp
GTC
[ENA]
¡û
>W1710711765
LDSU01000069
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSU]
4006
3930
-
Asp
GTC
[ENA]
¡û
>W1710711779
LDSV01000012
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSV]
119929
119853
-
Asp
GTC
[ENA]
¡û
>W1710711828
LDSW01000003
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSW]
54889
54813
-
Asp
GTC
[ENA]
¡û
>W1710711916
LDSX01000028
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSX]
118670
118594
-
Asp
GTC
[ENA]
¡û
>W1710711955
LDSY01000011
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSY]
55920
55844
-
Asp
GTC
[ENA]
¡û
>W1710712041
LDSZ01000038
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSZ]
45787
45863
+
Asp
GTC
[ENA]
¡û
>W1710712083
LDTA01000029
Gammaproteobacteria
Pseudomonas psychrotolerans [LDTA]
118685
118609
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK