This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297950 (12 seq.)
>W1711934387
NAJR01000002
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
600880
600956
+
Arg
TCT
[ENA]
¡û
>W1712080431
NGZL01000005
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
61668
61744
+
Arg
TCT
[ENA]
¡û
>C019786
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
1504560
1504636
+
Arg
TCT
[Ensembl]
¡û
>C022269
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
3179271
3179195
-
Arg
TCT
[Ensembl]
¡û
>W141171229
AXZL01000068
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
226021
226097
+
Arg
TCT
[ENA]
¡û
>C181062944
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
1749846
1749922
+
Arg
TCT
-
¡û
>C191017576
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
928785
928861
+
Arg
TCT
-
¡û
>C191205289
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
293462
293386
-
Arg
TCT
-
¡û
>W09102791
AAIN01000011
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
1543
1467
-
Arg
TCT
[ENA]
¡û
>W1910462898
FWPT01000007
Gammaproteobacteria
Parendozoicomonas haliclonae S-B4-1U [FWPT]
40610
40534
-
Arg
TCT
[ENA]
¡û
>W1910913734
NHRI01000002
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
37213
37289
+
Arg
TCT
[ENA]
¡û
>WENV051755
AACY022978035
Marine microbial communities from Global Ocean Sampling (GOS)
247
169
-
Arg
TCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK