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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298056 (44 seq.)
>W1711167244
LVWD01000026
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
162292
162368
+
Met
CAT
[ENA]
¡û
>W1711343187
MCIC01000001
Betaproteobacteria
Hydrogenophaga sp. H7 [MCIC]
187678
187754
+
Met
CAT
[ENA]
¡û
>W1711385291
MEEA01000062
Betaproteobacteria
Hydrogenophaga sp. SCN 70-13 [MEEA]
12625
12701
+
Met
CAT
[ENA]
¡û
>W1711394826
MERS01000016
Betaproteobacteria
Burkholderiales bacterium GWE1_65_30 [MERS]
591195
591119
-
Met
CAT
[ENA]
¡û
>W1711394844
MERT01000002
Betaproteobacteria
Burkholderiales bacterium GWF1_66_17 [MERT]
380318
380242
-
Met
CAT
[ENA]
¡û
>W1711453669
MIYM01000005
Betaproteobacteria
Hydrogenophaga sp. PML113 [MIYM]
355483
355559
+
Met
CAT
[ENA]
¡û
>W1711502464
MKSS01000202
Betaproteobacteria
Hydrogenophaga sp. 70-12 [MKSS]
85
9
-
Met
CAT
[ENA]
¡û
>W1711751706
MUNZ01000071
Betaproteobacteria
Hydrogenophaga sp. A37 [MUNZ]
46128
46204
+
Met
CAT
[ENA]
¡û
>W1712049951
NFUU01000001
Betaproteobacteria
Hydrogenophaga sp. IBVHS1 [NFUU]
130553
130629
+
Met
CAT
[ENA]
¡û
>C171060622
CP017311
Betaproteobacteria
Hydrogenophaga sp. PBC [CP017311]
3859584
3859508
-
Met
CAT
-
¡û
>C171063187
CP017476
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [CP017476]
795789
795865
+
Met
CAT
-
¡û
>WENV181321582
OFKM01017920
[OFKM] marine metagenome; sea ice
70
146
+
fMet
CAT
[ENA]
¢þ
>WENV181415588
OGCL01015697
[OGCL] hot springs metagenome; Hot spring water
1739
1815
+
fMet
CAT
[ENA]
¢þ
>W141214275
AZSO01000015
Betaproteobacteria
Hydrogenophaga sp. T4 [AZSO]
5348
5272
-
Met
CAT
[ENA]
¡û
>W141234395
BAWN01000001
Betaproteobacteria
Serpentinimonas barnesii H1 [BAWN]
21314
21390
+
Met
CAT
[ENA]
¡û
>W141260633
CCAE010000027
Betaproteobacteria
Hydrogenophaga intermedia [CCAE]
2113
2037
-
Met
CAT
[ENA]
¡û
>WENV170018752
BBPD01000671
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
5473
5549
+
Met
CAT
[ENA]
¢þ
>WENV170019354
BBPD01009019
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
548
472
-
Met
CAT
[ENA]
¢þ
>WENV170019767
BBPE01000622
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
28851
28775
-
Met
CAT
[ENA]
¢þ
>WENV170019838
BBPE01000936
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
9442
9366
-
Met
CAT
[ENA]
¢þ
>WENV170020046
BBPE01002436
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
3050
2974
-
Met
CAT
[ENA]
¢þ
>C191154092
CP037867
Betaproteobacteria
Hydrogenophaga pseudoflava DSM 1084 [CP037867]
598337
598413
+
Met
CAT
-
¡û
>C191163900
CP039252
Betaproteobacteria
Hydrogenophaga sp. PAMC20947 [CP039252]
3167288
3167212
-
Met
CAT
-
¡û
>W1910699829
MERX01000259
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_66_10 [MERX]
6665
6741
+
Met
CAT
[ENA]
¡û
>W1910700007
MESC01000267
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_67_38 [MESC]
8087
8163
+
Met
CAT
[ENA]
¡û
>W1910700159
MESG01000091
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_67_64 [MESG]
23885
23809
-
Met
CAT
[ENA]
¡û
>W1910700177
MESH01000015
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_67_14 [MESH]
30502
30578
+
Met
CAT
[ENA]
¡û
>W1911398085
NWMV01000101
Betaproteobacteria
Macromonas nakdongensis BK-30 [NWMV]
13488
13564
+
Met
CAT
[ENA]
¡û
>W1810912354
QVLS01000008
Betaproteobacteria
Hydrogenophaga borbori LA-38 [QVLS]
151398
151474
+
Met
CAT
[ENA]
¡û
>C151002077
AP014568
Betaproteobacteria
Serpentinimonas raichei A1 [AP014568]
41630
41706
+
Met
CAT
[Ensembl]
¡û
>C151002120
AP014569
Betaproteobacteria
Serpentinimonas maccroryi B1 [AP014569]
49507
49583
+
Met
CAT
[Ensembl]
¡û
>W1511429838
JUEA01000003
Betaproteobacteria
Comamonadaceae bacterium BICA1-1 [JUEA]
56364
56440
+
Met
CAT
[ENA]
¡û
>W121070101
AJWL01000003
Betaproteobacteria
Hydrogenophaga sp. PBC [AJWL]
669
593
-
Met
CAT
[ENA]
¡û
>W1610070365
BCTF01000001
Betaproteobacteria
Hydrogenophaga flava NBRC 102514 [BCTF]
232384
232308
-
Met
CAT
[ENA]
¡û
>W1610070542
BCTI01000033
Betaproteobacteria
Hydrogenophaga intermedia NBRC 102510 [BCTI]
56843
56919
+
Met
CAT
[ENA]
¡û
>W1610070567
BCTJ01000005
Betaproteobacteria
Hydrogenophaga palleronii NBRC 102513 [BCTJ]
115739
115663
-
Met
CAT
[ENA]
¡û
>W1610074404
BCWQ01000011
Betaproteobacteria
Hydrogenophaga pseudoflava NBRC 102511 [BCWQ]
521
445
-
Met
CAT
[ENA]
¡û
>W1610074449
BCWR01000019
Betaproteobacteria
Hydrogenophaga taeniospiralis NBRC 102512 [BCWR]
190927
191003
+
Met
CAT
[ENA]
¡û
>W1610977575
LVWD01000026
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
162292
162368
+
Met
CAT
[ENA]
¡û
>W1710067738
BCTF01000001
Betaproteobacteria
Hydrogenophaga flava NBRC 102514 [BCTF]
232384
232308
-
Met
CAT
[ENA]
¡û
>W1710067915
BCTI01000033
Betaproteobacteria
Hydrogenophaga intermedia NBRC 102510 [BCTI]
56843
56919
+
Met
CAT
[ENA]
¡û
>W1710067940
BCTJ01000005
Betaproteobacteria
Hydrogenophaga palleronii NBRC 102513 [BCTJ]
115739
115663
-
Met
CAT
[ENA]
¡û
>W1710071522
BCWQ01000011
Betaproteobacteria
Hydrogenophaga pseudoflava NBRC 102511 [BCWQ]
521
445
-
Met
CAT
[ENA]
¡û
>W1710071567
BCWR01000019
Betaproteobacteria
Hydrogenophaga taeniospiralis NBRC 102512 [BCWR]
190927
191003
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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