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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29817 (54 seq.)
>W1710999029
LQDA01000072
Mycoplasmatota
Mycoplasmopsis bovis [LQDA]
43113
43024
-
Ser
CGA
[ENA]
¡û
>W1710999033
LQDB01000009
Mycoplasmatota
Mycoplasmopsis bovis [LQDB]
41931
41842
-
Ser
CGA
[ENA]
¡û
>W1710999272
LQDG01000074
Mycoplasmatota
Mycoplasmopsis bovis [LQDG]
42322
42233
-
Ser
CGA
[ENA]
¡û
>W1710999303
LQDH01000083
Mycoplasmatota
Mycoplasmopsis bovis [LQDH]
43113
43024
-
Ser
CGA
[ENA]
¡û
>W1710999380
LQDJ01000067
Mycoplasmatota
Mycoplasmopsis bovis [LQDJ]
42320
42231
-
Ser
CGA
[ENA]
¡û
>W1710999480
LQDM01000022
Mycoplasmatota
Mycoplasmopsis bovis [LQDM]
42265
42176
-
Ser
CGA
[ENA]
¡û
>W1710999630
LQDP01000072
Mycoplasmatota
Mycoplasmopsis bovis [LQDP]
42323
42234
-
Ser
CGA
[ENA]
¡û
>W1710999704
LQDR01000073
Mycoplasmatota
Mycoplasmopsis bovis [LQDR]
42332
42243
-
Ser
CGA
[ENA]
¡û
>W1710999759
LQDT01000057
Mycoplasmatota
Mycoplasmopsis bovis [LQDT]
10114
10203
+
Ser
CGA
[ENA]
¡û
>W1710999811
LQDU01000069
Mycoplasmatota
Mycoplasmopsis bovis [LQDU]
42318
42229
-
Ser
CGA
[ENA]
¡û
>W1710999841
LQDV01000065
Mycoplasmatota
Mycoplasmopsis bovis [LQDV]
42267
42178
-
Ser
CGA
[ENA]
¡û
>W1710999917
LQDX01000068
Mycoplasmatota
Mycoplasmopsis bovis [LQDX]
42322
42233
-
Ser
CGA
[ENA]
¡û
>W1711000178
LQED01000072
Mycoplasmatota
Mycoplasmopsis bovis [LQED]
42322
42233
-
Ser
CGA
[ENA]
¡û
>W1711000236
LQEF01000067
Mycoplasmatota
Mycoplasmopsis bovis [LQEF]
10114
10203
+
Ser
CGA
[ENA]
¡û
>W1711000649
LQEO01000070
Mycoplasmatota
Mycoplasmopsis bovis [LQEO]
42324
42235
-
Ser
CGA
[ENA]
¡û
>W1711000994
LQEW01000075
Mycoplasmatota
Mycoplasmopsis bovis [LQEW]
42319
42230
-
Ser
CGA
[ENA]
¡û
>W1711001059
LQEY01000037
Mycoplasmatota
Mycoplasmopsis bovis [LQEY]
42326
42237
-
Ser
CGA
[ENA]
¡û
>W1711001221
LQFC01000034
Mycoplasmatota
Mycoplasmopsis bovis [LQFC]
42326
42237
-
Ser
CGA
[ENA]
¡û
>W1711001343
LQFF01000057
Mycoplasmatota
Mycoplasmopsis bovis [LQFF]
10114
10203
+
Ser
CGA
[ENA]
¡û
>W1711001979
LQFU01000030
Mycoplasmatota
Mycoplasmopsis bovis [LQFU]
42334
42245
-
Ser
CGA
[ENA]
¡û
>C171097599
CP019639
Mycoplasmatota
Mycoplasmopsis bovis 08M [CP019639]
936067
935978
-
Ser
CGA
-
¡û
>C012879
CU179680
Mycoplasmatota
Mycoplasmopsis agalactiae PG2 [CU179680]
808330
808241
-
Ser
CGA
[Ensembl]
¡û
>C181069092
CP022586
Mycoplasmatota
Mycoplasmopsis bovis MJ2 [CP022586]
892748
892659
-
Ser
CGA
-
¡û
>C181069139
CP022587
Mycoplasmatota
Mycoplasmopsis bovis MJ3 [CP022587]
931682
931593
-
Ser
CGA
-
¡û
>C181069173
CP022588
Mycoplasmatota
Mycoplasmopsis bovis MJ4 [CP022588]
962833
962744
-
Ser
CGA
-
¡û
>C181069207
CP022589
Mycoplasmatota
Mycoplasmopsis bovis NADC18 [CP022589]
1034105
1034016
-
Ser
CGA
-
¡û
>C181069241
CP022590
Mycoplasmatota
Mycoplasmopsis bovis NADC54 [CP022590]
1061144
1061055
-
Ser
CGA
-
¡û
>C181069275
CP022591
Mycoplasmatota
Mycoplasmopsis bovis NADC55 [CP022591]
1077229
1077140
-
Ser
CGA
-
¡û
>C181069295
CP022592
Mycoplasmatota
Mycoplasmopsis bovis NADC56 [CP022592]
1002141
1002052
-
Ser
CGA
-
¡û
>C181069330
CP022593
Mycoplasmatota
Mycoplasmopsis bovis NADC57 [CP022593]
901427
901338
-
Ser
CGA
-
¡û
>C181069377
CP022594
Mycoplasmatota
Mycoplasmopsis bovis NADC58 [CP022594]
1017703
1017614
-
Ser
CGA
-
¡û
>C181069411
CP022595
Mycoplasmatota
Mycoplasmopsis bovis NADC62 [CP022595]
1073488
1073399
-
Ser
CGA
-
¡û
>C181069445
CP022596
Mycoplasmatota
Mycoplasmopsis bovis NADC67 [CP022596]
1033316
1033227
-
Ser
CGA
-
¡û
>C181069479
CP022597
Mycoplasmatota
Mycoplasmopsis bovis NADC68 [CP022597]
1024318
1024229
-
Ser
CGA
-
¡û
>C181069513
CP022598
Mycoplasmatota
Mycoplasmopsis bovis NADC70 [CP022598]
1020191
1020102
-
Ser
CGA
-
¡û
>C181069547
CP022599
Mycoplasmatota
Mycoplasmopsis bovis NADC61 [CP022599]
1033957
1033868
-
Ser
CGA
-
¡û
>C181088362
CP023663
Mycoplasmatota
Mycoplasmopsis bovis Ningxia-1 [CP023663]
948594
948505
-
Ser
CGA
-
¡û
>C181218513
LT578418
Mycoplasmatota
Mycoplasmopsis agalactiae [LT578418]
778369
778458
+
Ser
CGA
-
¡û
>C181218573
LT578453
Mycoplasmatota
Mycoplasmopsis bovis [LT578453]
919909
919820
-
Ser
CGA
-
¡û
>C191162644
CP038861
Mycoplasmatota
Mycoplasmopsis bovis 16M [CP038861]
927296
927207
-
Ser
CGA
-
¡û
>W141732242
JNJV01000047
Mycoplasmatota
Mycoplasmopsis primatum ATCC 25948 [JNJV]
286
197
-
Ser
CGA
[ENA]
¡û
>W1910598019
LAUS01000002
Mycoplasmatota
Mycoplasmopsis bovis 8790 [LAUS]
11487
11576
+
Ser
CGA
[ENA]
¡û
>W1910598053
LAUT01000002
Mycoplasmatota
Mycoplasmopsis bovis 1067 [LAUT]
9950
10039
+
Ser
CGA
[ENA]
¡û
>W1910657492
MAQC01000072
Mycoplasmatota
Mycoplasmopsis bovis HS-130614 [MAQC]
9982
10071
+
Ser
CGA
[ENA]
¡û
>C151007544
CP005933
Mycoplasmatota
Mycoplasmopsis bovis CQ-W70 [CP005933]
877310
877221
-
Ser
CGA
[Ensembl]
¡û
>C151081126
CP011348
Mycoplasmatota
Mycoplasmopsis bovis NM 2012 [CP011348]
917246
917157
-
Ser
CGA
[Ensembl]
¡û
>C11113965
CP002513
Mycoplasmatota
Mycoplasmopsis bovis Hubei-1 [CP002513]
876911
876822
-
Ser
CGA
[Ensembl]
¡û
>C11113986
CP002188
Mycoplasmatota
Mycoplasmopsis bovis PG45 [CP002188]
915539
915450
-
Ser
CGA
[Ensembl]
¡û
>C121001909
CP002058
Mycoplasmatota
Mycoplasmopsis bovis HB0801 [CP002058]
912864
912775
-
Ser
CGA
[Ensembl]
¡û
>C121016412
FP671138
Mycoplasmatota
Mycoplasmopsis agalactiae 5632 [FP671138]
923803
923714
-
Ser
CGA
[Ensembl]
¡û
>C161017449
CP007589
Mycoplasmatota
Mycoplasmopsis bovis HB0801-P115 [CP007589]
898482
898393
-
Ser
CGA
-
¡û
>C161017483
CP007590
Mycoplasmatota
Mycoplasmopsis bovis HB0801-P150 [CP007590]
898470
898381
-
Ser
CGA
-
¡û
>C161017517
CP007591
Mycoplasmatota
Mycoplasmopsis bovis HB0801-P180 [CP007591]
898424
898335
-
Ser
CGA
-
¡û
>W121065155
AJPR01000006
Mycoplasmatota
Mycoplasmopsis agalactiae 14628 [AJPR]
150846
150757
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK