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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298209 (20 seq.)
>W1711135006
LUYL01000023
Actinomycetota
Actinomycetales bacterium Actino_01 [LUYL]
46243
46318
+
Thr
CGT
[ENA]
¡û
>W131217689
ATXA01000025
Actinomycetota
Frankia sp. Iso899 [ATXA]
18806
18731
-
Thr
CGT
[ENA]
¡û
>WENV181401631
OFTX01001771
[OFTX] sludge metagenome; sludge
402
475
+
Thr
CGT
[ENA]
¢þ
>W141241260
CAHD01000084
Actinomycetota
Cellulomonas massiliensis JC225 [CAHD]
3101
3176
+
Thr
CGT
[ENA]
¡û
>WENV183734946
PJUA01000211
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
17500
17573
+
Thr
CGT
[ENA]
¢þ
>WENV183736311
PJUC01000554
[PJUC] soil metagenome; Soil enriched on filter paper
13581
13508
-
Thr
CGT
[ENA]
¢þ
>WENV183736401
PJUC01001920
[PJUC] soil metagenome; Soil enriched on filter paper
3701
3774
+
Thr
CGT
[ENA]
¢þ
>WENV183736577
PJUC01015050
[PJUC] soil metagenome; Soil enriched on filter paper
742
668
-
Thr
CGT
[ENA]
¢þ
>WENV170551951
CXWJ01031417
[CXWJ] wastewater metagenome; activated sludge
8942
8867
-
Thr
CGT
[ENA]
¢þ
>C181052410
CP021430
Actinomycetota
Cellulomonas sp. PSBB021 [CP021430]
3387925
3388000
+
Thr
CGT
-
¡û
>W09108534
ABTJ01000010
Actinomycetota
Cellulomonas flavigena DSM 20109 [ABTJ]
10814
10741
-
Thr
CGT
[ENA]
¡û
>C191164686
CP039291
Actinomycetota
Cellulomonas shaoxiangyii Z28 [CP039291]
3344384
3344311
-
Thr
CGT
-
¡û
>C191210041
LR134387
Actinomycetota
Cellulomonas fimi NCTC7547 [LR134387]
531373
531448
+
Thr
CGT
-
¡û
>W1910129180
BHYL01000097
Actinomycetota
Cellulomonas algicola TKZ-21 [BHYL]
13614
13689
+
Thr
CGT
[ENA]
¡û
>W1910155465
BIMR01000022
Actinomycetota
Cellulomonas biazotea NBRC12680 [BIMR]
16951
17026
+
Thr
CGT
[ENA]
¡û
>W1910181044
BJLP01000024
Actinomycetota
Cellulomonas uda NBRC 3747 [BJLP]
26049
25974
-
Thr
CGT
[ENA]
¡û
>W1911768052
QXFN01000002
Actinomycetota
Cellulomonas telluris CPCC 204705 [QXFN]
92360
92433
+
Thr
CGT
[ENA]
¡û
>C10103424
CP001964
Actinomycetota
Cellulomonas flavigena DSM 20109 [CP001964]
619218
619291
+
Thr
CGT
[Ensembl]
¡û
>C11105012
CP002666
Actinomycetota
Cellulomonas fimi ATCC 484 [CP002666]
531459
531534
+
Thr
CGT
[Ensembl]
¡û
>W1610946126
LUYL01000023
Actinomycetota
Actinomycetales bacterium Actino_01 [LUYL]
46243
46318
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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