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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298259 (43 seq.)
>W1710811741
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
1881767
1881692
-
Phe
GAA
[ENA]
¡û
>W1710864818
LMGE01000011
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
105492
105567
+
Phe
GAA
[ENA]
¡û
>W1710865514
LMGS01000011
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
217254
217179
-
Phe
GAA
[ENA]
¡û
>W1711055759
LRVE01000023
Gammaproteobacteria
Xylella fastidiosa [LRVE]
33126
33051
-
Phe
GAA
[ENA]
¡û
>W1711424126
MIDU01000113
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYA1_FULL_68_6 [MIDU]
1408
1483
+
Phe
GAA
[ENA]
¡û
>WENV181221767
OFCY01000087
[OFCY] metagenome; soil
11051
10976
-
Phe
GAA
[ENA]
¢þ
>WENV181221829
OFCZ01000014
[OFCZ] metagenome; soil
41829
41754
-
Phe
GAA
[ENA]
¢þ
>WENV181222440
OFDB01000027
[OFDB] metagenome; soil
25949
25874
-
Phe
GAA
[ENA]
¢þ
>WENV181296414
OFHJ01034047
[OFHJ] soil metagenome; Clay
162
237
+
Phe
GAA
[ENA]
¢þ
>WENV183729005
PJTQ01002163
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1666
1591
-
Phe
GAA
[ENA]
¢þ
>WENV183735534
PJUB01000034
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
114590
114515
-
Phe
GAA
[ENA]
¢þ
>WENV183741585
PJUG01000101
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
12027
11952
-
Phe
GAA
[ENA]
¢þ
>WENV183743094
PJUJ01000030
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
114769
114694
-
Phe
GAA
[ENA]
¢þ
>WENV183743908
PJUK01000034
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
114769
114694
-
Phe
GAA
[ENA]
¢þ
>WENV183748464
PPFU01041879
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2783
2708
-
Phe
GAA
[ENA]
¢þ
>WENV170193888
CEPI01062169
[CEPI] marine metagenome genome assembly TARA_041_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
911
836
-
Phe
GAA
[ENA]
¢þ
>WENV170705518
LNAO01001548
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3874
3799
-
Phe
GAA
[ENA]
¢þ
>WENV170966247
MTEX01005111
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
4283
4358
+
Phe
GAA
[ENA]
¢þ
>WENV170966644
MTEY01002258
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
4465
4390
-
Phe
GAA
[ENA]
¢þ
>WENV170966653
MTEY01002680
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
2719
2644
-
Phe
GAA
[ENA]
¢þ
>C181000997
AP014940
Gammaproteobacteria
Lysobacter enzymogenes M497-1 [AP014940]
1874150
1874225
+
Phe
GAA
-
¡û
>C181008034
CP009826
Gammaproteobacteria
Xylella fastidiosa Pr8x [CP009826]
308269
308344
+
Phe
GAA
-
¡û
>C181011019
CP011800
Gammaproteobacteria
Xylella taiwanensis PLS235 [CP011800]
365389
365464
+
Phe
GAA
-
¡û
>C181186016
CP029843
Gammaproteobacteria
Lysobacter maris HZ9B [CP029843]
1287417
1287342
-
Phe
GAA
-
¡û
>C191138633
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
533580
533505
-
Phe
GAA
-
¡û
>C191139399
CP035376
Gammaproteobacteria
Luteimonas sp. YGD11-2 [CP035376]
1160445
1160370
-
Phe
GAA
-
¡û
>C191181061
CP040656
Gammaproteobacteria
Lysobacter enzymogenes YC36 [CP040656]
4134132
4134057
-
Phe
GAA
-
¡û
>W1911283840
NTJI01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0399 [NTJI]
236872
236797
-
Phe
GAA
[ENA]
¡û
>W1911405422
NWQP01000020
Gammaproteobacteria
Xanthomonadaceae bacterium NML71-0210 [NWQP]
23698
23623
-
Phe
GAA
[ENA]
¡û
>W1911405493
NWQR01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML08-0793 [NWQR]
155013
155088
+
Phe
GAA
[ENA]
¡û
>W1911497073
OCND01000004
Gammaproteobacteria
Pseudoxanthomonas wuyuanensis CGMCC 1.10978 [OCND]
102629
102704
+
Phe
GAA
[ENA]
¡û
>W1810914453
QVPD01000001
Gammaproteobacteria
Luteimonas weifangensis WF-2 [QVPD]
108111
108186
+
Phe
GAA
[ENA]
¡û
>W11172538
AFSN01000010
Gammaproteobacteria
Pseudoxanthomonas spadix BD-a59 [AFSN]
668778
668703
-
Phe
GAA
[ENA]
¡û
>C121005606
CP003093
Gammaproteobacteria
Pseudoxanthomonas spadix BD-a59 [CP003093]
1158168
1158093
-
Phe
GAA
[Ensembl]
¡û
>C161052043
CP013140
Gammaproteobacteria
Lysobacter enzymogenes C3 [CP013140]
3942218
3942143
-
Phe
GAA
[Ensembl]
¡û
>W1610587270
LDJO01000070
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
16019
16094
+
Phe
GAA
[ENA]
¡û
>W1610675838
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
1881767
1881692
-
Phe
GAA
[ENA]
¡û
>W1610727164
LMGE01000011
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
105492
105567
+
Phe
GAA
[ENA]
¡û
>W1610727860
LMGS01000011
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
217254
217179
-
Phe
GAA
[ENA]
¡û
>W1610896805
LRVE01000023
Gammaproteobacteria
Xylella fastidiosa [LRVE]
33126
33051
-
Phe
GAA
[ENA]
¡û
>W1710527585
FNLD01000001
Gammaproteobacteria
Pseudoxanthomonas sp. CF125 [FNLD]
1432631
1432706
+
Phe
GAA
[ENA]
¡û
>W1710604259
FUZV01000001
Gammaproteobacteria
Pseudoxanthomonas indica [FUZV]
721134
721209
+
Phe
GAA
[ENA]
¡û
>W1710706400
LDJO01000070
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
16019
16094
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK