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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298370 (42 seq.)
>W1710883037
LMVH01000002
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum [LMVH]
167980
167905
-
His
GTG
[ENA]
¡û
>W1711095492
LTGW01000094
Fusobacteriota
Fusobacterium sp. HMSC064B12 [LTGW]
2391
2316
-
His
GTG
[ENA]
¡û
>W1711525277
MLQO01000029
Fusobacteriota
Fusobacterium nucleatum [MLQO]
11281
11356
+
His
GTG
[ENA]
¡û
>W131100389
AOUL01000357
Fusobacteriota
Fusobacterium nucleatum CC53 [AOUL]
8215
8140
-
His
GTG
[ENA]
¡û
>WENV180154121
OAUS01015883
[OAUS] human gut metagenome; faeces
598
523
-
His
GTG
[ENA]
¢þ
>w002470
AABF01000001
Fusobacteriota
Fusobacterium vincentii subsp. vincentii ATCC 49256 [AABF]
51596
51519
-
His
GTG
[ENA]
¡û
>WENV180698027
ODDE01022056
[ODDE] human metagenome; G_DNA_Supragingival plaque
451
376
-
His
GTG
[ENA]
¢þ
>WENV180718263
ODGF01020093
[ODGF] human metagenome; G_DNA_Throat
65
140
+
His
GTG
[ENA]
¢þ
>W141078893
ATKB01000053
Fusobacteriota
Fusobacterium vincentii subsp. vincentii ChDC F8 [ATKB]
14863
14938
+
His
GTG
[ENA]
¡û
>W141078927
ATKC01000060
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ChDC F316 [ATKC]
290
215
-
His
GTG
[ENA]
¡û
>WENV180874759
ODLQ01005300
[ODLQ] human metagenome; G_DNA_Tongue dorsum
219
144
-
His
GTG
[ENA]
¢þ
>WENV181363533
OFOU01000578
[OFOU] human gut metagenome; human gut
23302
23227
-
His
GTG
[ENA]
¢þ
>WENV181428341
OGCV01000157
[OGCV] metagenome; Human gut stool
160
235
+
His
GTG
[ENA]
¢þ
>W141157884
AXNU01000073
Fusobacteriota
Fusobacterium nucleatum CTI-7 [AXNU]
10372
10447
+
His
GTG
[ENA]
¡û
>W141158037
AXNY01000021
Fusobacteriota
Fusobacterium nucleatum CTI-2 [AXNY]
9479
9404
-
His
GTG
[ENA]
¡û
>W141168164
AXUR01000037
Fusobacteriota
Fusobacterium nucleatum W1481 [AXUR]
28331
28406
+
His
GTG
[ENA]
¡û
>WENV181794566
OGRS01000954
[OGRS] human gut metagenome; faeces
6570
6645
+
His
GTG
[ENA]
¢þ
>WENV181892110
OGXP01000366
[OGXP] human gut metagenome; faeces
29887
29962
+
His
GTG
[ENA]
¢þ
>WENV181958994
OGZM01001099
[OGZM] human gut metagenome; faeces
1320
1395
+
His
GTG
[ENA]
¢þ
>WENV183510492
OMHO01005691
[OMHO] human oral metagenome; human oral
66
141
+
His
GTG
[ENA]
¢þ
>WENV183510729
OMHQ01005610
[OMHQ] human oral metagenome; human oral
278
353
+
His
GTG
[ENA]
¢þ
>WENV170005502
AMCI01006118
[AMCI] gut metagenome; fecal sample from gut
229
304
+
His
GTG
[ENA]
¢þ
>C181058804
CP022122
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ChDC F317 [CP022122]
2138709
2138634
-
His
GTG
-
¡û
>C181105007
CP024749
Fusobacteriota
Fusobacterium vincentii KCOM 2931 [CP024749]
1584237
1584312
+
His
GTG
-
¡û
>C181160874
CP028101
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [CP028101]
605210
605285
+
His
GTG
-
¡û
>C181161246
CP028109
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [CP028109]
671317
671392
+
His
GTG
-
¡û
>W141560751
JHXW01000013
Fusobacteriota
Fusobacterium perfoetens ATCC 29250 [JHXW]
19200
19275
+
His
GTG
[ENA]
¡û
>W09118664
ACDE01000020
Fusobacteriota
Fusobacterium vincentii 4_1_13 [ACDE]
6552
6477
-
His
GTG
[ENA]
¡û
>C141001775
CP003700
Fusobacteriota
Fusobacterium vincentii 3_1_36A2 [CP003700]
160933
161008
+
His
GTG
[Ensembl]
¡û
>W1810076322
PEIJ01000001
Fusobacteriota
Fusobacterium vincentii subsp. vincentii KCOM 2880 [PEIJ]
800580
800505
-
His
GTG
[ENA]
¡û
>C151016837
CP007064
Fusobacteriota
Fusobacterium vincentii 3_1_27 [CP007064, CP007065]
160421
160496
+
His
GTG
[Ensembl]
¡û
>C151097764
CP012714
Fusobacteriota
Fusobacterium vincentii ChDC F8 KCOM 1231 [CP012714]
98303
98378
+
His
GTG
-
¡û
>C151097835
CP012716
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ChDC F316 KCOM 1322 [CP012716]
730369
730444
+
His
GTG
-
¡û
>C151097875
CP012717
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum KCOM 1250 [CP012717]
1768786
1768861
+
His
GTG
-
¡û
>W10102891
ACPU01000043
Fusobacteriota
Fusobacterium vincentii 3_1_36A2 [ACPU]
6829
6754
-
His
GTG
[ENA]
¡û
>W10113534
ADGF01000010
Fusobacteriota
Fusobacterium vincentii 3_1_27 [ADGF]
6542
6467
-
His
GTG
[ENA]
¡û
>W10119100
ADVK01000006
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [ADVK]
5156
5081
-
His
GTG
[ENA]
¡û
>W11103047
ACPU01000043
Fusobacteriota
Fusobacterium vincentii 3_1_36A2 [ACPU]
6829
6754
-
His
GTG
[ENA]
¡û
>W11116823
ADGF01000010
Fusobacteriota
Fusobacterium vincentii 3_1_27 [ADGF]
6542
6467
-
His
GTG
[ENA]
¡û
>W11125320
ADVK01000006
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [ADVK]
5156
5081
-
His
GTG
[ENA]
¡û
>W121102412
AKXI01000001
Fusobacteriota
Fusobacterium vincentii subsp. fusiforme ATCC 51190 [AKXI]
51610
51535
-
His
GTG
[ENA]
¡û
>W1610744963
LMVH01000002
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum [LMVH]
167980
167905
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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