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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298397 (31 seq.)
>A171004508
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
23253
23328
+
Val
TAC
-
¡û
>A171004608
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
883642
883567
-
Val
TAC
-
¡û
>A171004622
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
1504228
1504302
+
Val
TAC
-
¡û
>A171004674
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
1402688
1402762
+
Val
TAC
-
¡û
>A171004799
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
2740508
2740434
-
Val
TAC
-
¡û
>A171004831
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
2810451
2810525
+
Val
TAC
-
¡û
>A171004886
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
3300869
3300943
+
Val
TAC
-
¡û
>A171005204
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
2652925
2652999
+
Val
TAC
-
¡û
>A171005249
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
1488718
1488792
+
Val
TAC
-
¡û
>A171005330
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
3260470
3260397
-
Val
TAC
-
¡û
>A171005444
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
888932
888858
-
Val
TAC
-
¡û
>A171005501
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
878973
878899
-
Val
TAC
-
¡û
>WENV170008174
AMZC01003635
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
144
69
-
Val
TAC
[ENA]
¢þ
>At1383
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
2228030
2228103
+
Val
TAC
[Ensembl]
¡û
>WENV170686600
LFRM01153609
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
81562
81487
-
Val
TAC
[ENA]
¢þ
>WENV170784244
MCHG01000218
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
511
586
+
Val
TAC
[ENA]
¢þ
>WENV170784355
MCHG01001058
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
3692
3617
-
Val
TAC
[ENA]
¢þ
>W1910230905
FPAO01000007
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
112408
112483
+
Val
TAC
[ENA]
¡û
>W1910569432
JJOV01000011
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
9171
9097
-
Val
TAC
[ENA]
¡û
>W1910569480
JJOW01000003
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
26837
26763
-
Val
TAC
[ENA]
¡û
>W1910569547
JJOX01000060
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
66912
66838
-
Val
TAC
[ENA]
¡û
>W1910569590
JJOY01000006
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
117474
117548
+
Val
TAC
[ENA]
¡û
>W1910569646
JJOZ01000020
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
66912
66838
-
Val
TAC
[ENA]
¡û
>W1910571611
JJQL01000095
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
61340
61266
-
Val
TAC
[ENA]
¡û
>W1910572280
JJQY01000120
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
29523
29597
+
Val
TAC
[ENA]
¡û
>W1910635251
LMVP01000175
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
1947
1874
-
Val
TAC
[ENA]
¡û
>W1910694810
MDTP02000214
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
1571
1646
+
Val
TAC
[ENA]
¡û
>W1910694813
MDTP02000277
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
2006
1931
-
Val
TAC
[ENA]
¡û
>W1610046905
BBCW01000041
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
24040
23964
-
Val
TAC
[ENA]
¡û
>W1610605103
LFRP01000018
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
81562
81487
-
Val
TAC
[ENA]
¡û
>W1610670237
LKAZ01000027
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
60642
60567
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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