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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298417 (22 seq.)
>W131162543
AQYY01000019
Bacillota
Dehalobacter sp. FTH1 [AQYY]
25874
25798
-
Asp
GTC
[ENA]
¡û
>W131162556
AQYY01000026
Bacillota
Dehalobacter sp. FTH1 [AQYY]
3287
3211
-
Asp
GTC
[ENA]
¡û
>W1711342426
MCHF01000002
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
169487
169563
+
Asp
GTC
[ENA]
¡û
>W1711342457
MCHF01000040
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
23554
23478
-
Asp
GTC
[ENA]
¡û
>W141088290
AUUR01000120
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
17908
17832
-
Asp
GTC
[ENA]
¡û
>W141246564
CANE01000029
Bacillota
Dehalobacter restrictus E1 [CANE]
8286
8362
+
Asp
GTC
[ENA]
¡û
>W141246572
CANE01000031
Bacillota
Dehalobacter restrictus E1 [CANE]
14328
14404
+
Asp
GTC
[ENA]
¡û
>W141246602
CANF01000022
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
8285
8361
+
Asp
GTC
[ENA]
¡û
>W141246654
CANF01002296
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
5901
5825
-
Asp
GTC
[ENA]
¡û
>WENV170659040
JXWO01000123
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
31255
31331
+
Asp
GTC
[ENA]
¢þ
>C141011723
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
235506
235582
+
Asp
GTC
[Ensembl]
¡û
>C141011740
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
1153163
1153239
+
Asp
GTC
[Ensembl]
¡û
>W1910647141
LXPC01000002
Bacillota
Dehalobacter sp. MCB1 [LXPC]
25843
25767
-
Asp
GTC
[ENA]
¡û
>W1910647180
LXPC01000019
Bacillota
Dehalobacter sp. MCB1 [LXPC]
8608
8684
+
Asp
GTC
[ENA]
¡û
>W1911608685
PNXX01000005
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
46219
46143
-
Asp
GTC
[ENA]
¡û
>W1911608708
PNXX01000013
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
22806
22882
+
Asp
GTC
[ENA]
¡û
>W1911613538
POSF01000006
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
25594
25518
-
Asp
GTC
[ENA]
¡û
>W1911613570
POSF01000021
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
48873
48797
-
Asp
GTC
[ENA]
¡û
>C131008533
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2085507
2085431
-
Asp
GTC
[Ensembl]
¡û
>C131008547
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2050112
2050036
-
Asp
GTC
[Ensembl]
¡û
>C131008584
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2115295
2115219
-
Asp
GTC
[Ensembl]
¡û
>C131008598
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2079893
2079817
-
Asp
GTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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