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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298432 (44 seq.)
>W1711377598
MDZB01000098
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
61750
61823
+
Gly
TCC
[ENA]
¡û
>W1711377651
MDZC01000090
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
129741
129668
-
Gly
TCC
[ENA]
¡û
>WENV180691456
OCZS010129715
[OCZS] soil metagenome; soil
289
362
+
Gly
TCC
[ENA]
¢þ
>WENV181165416
OEIR01807470
[OEIR] soil metagenome; soil
60
133
+
Gly
TCC
[ENA]
¢þ
>WENV181402287
OFTY01000446
[OFTY] sludge metagenome; sludge
3208
3135
-
Gly
TCC
[ENA]
¢þ
>WENV181850288
OGWC01012282
[OGWC] freshwater metagenome; freshwater
100
25
-
Gly
TCC
[ENA]
¢þ
>WENV170009657
APMI01001299
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
53840
53915
+
Gly
TCC
[ENA]
¢þ
>WENV170010222
APMI01010940
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
4127
4054
-
Gly
TCC
[ENA]
¢þ
>WENV170994500
MWWE01001875
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
3718
3645
-
Gly
TCC
[ENA]
¢þ
>W141734735
JNLX01000184
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
76327
76400
+
Gly
TCC
[ENA]
¡û
>W1910651891
LYMU01000059
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
172567
172640
+
Gly
TCC
[ENA]
¡û
>W1911775062
QXMH01000002
Bacteroidota
Chitinophaga alhagiae T22 [QXMH]
372837
372910
+
Gly
TCC
[ENA]
¡û
>W1911788132
QYCN01000001
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
141545
141472
-
Gly
TCC
[ENA]
¡û
>SRA1003004
SRR002326.147258
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
167
240
+
Gly
TCC
[SRA]
>W1810239583
PPSL01000005
Bacteroidota
Flavipsychrobacter stenotrophus RB1R16 [PPSL]
115673
115600
-
Gly
TCC
[ENA]
¡û
>W1810400829
PYGK01000006
Bacteroidota
Chitinophaga ginsengisoli DSM 18107 [PYGK]
27070
27143
+
Gly
TCC
[ENA]
¡û
>W1810483277
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
4096293
4096220
-
Gly
TCC
[ENA]
¡û
>W1810532596
QCYL01000001
Bacteroidota
Chitinophaga costaii A37T2 [QCYL]
790667
790594
-
Gly
TCC
[ENA]
¡û
>W1810586456
QFFJ01000002
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
387070
387143
+
Gly
TCC
[ENA]
¡û
>W1810586507
QFFK01000005
Bacteroidota
Chitinophaga deserti XJ-2 [QFFK]
142953
143026
+
Gly
TCC
[ENA]
¡û
>W1810608353
QGTG01000004
Bacteroidota
Chitinophaga sp. S165 [QGTG]
161771
161844
+
Gly
TCC
[ENA]
¡û
>W1810721940
QNTR01000002
Bacteroidota
Chitinophaga arvensicola 10_5 24_1 [QNTR]
813663
813590
-
Gly
TCC
[ENA]
¡û
>W1810858509
QTJV01000001
Bacteroidota
Chitinophaga silvisoli K20C18050901 [QTJV]
271043
271116
+
Gly
TCC
[ENA]
¡û
>SRA1014812
SRR023845.323050
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
164
237
+
Gly
TCC
[SRA]
>C151009413
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
2647506
2647581
+
Gly
TCC
[Ensembl]
¡û
>C151017373
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
4070538
4070465
-
Gly
TCC
[Ensembl]
¡û
>C151071865
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
255105
255178
+
Gly
TCC
[Ensembl]
¡û
>C10103727
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
2043773
2043846
+
Gly
TCC
[Ensembl]
¡û
>C161028416
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
2243960
2244033
+
Gly
TCC
[Ensembl]
¡û
>C161043248
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
2855625
2855698
+
Gly
TCC
[Ensembl]
¡û
>C161061545
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
1906654
1906727
+
Gly
TCC
[Ensembl]
¡û
>W1610514946
FMAR01000001
Bacteroidota
Chitinophaga costaii [FMAR]
650588
650515
-
Gly
TCC
[ENA]
¡û
>W1610574599
JZQW01000054
Bacteroidota
Candidatus Parvibacillus calidus OLB8 [JZQW]
41180
41105
-
Gly
TCC
[ENA]
¡û
>W1710500636
FMAR01000001
Bacteroidota
Chitinophaga costaii [FMAR]
650588
650515
-
Gly
TCC
[ENA]
¡û
>W1710515145
FNBN01000006
Bacteroidota
Chitinophaga filiformis [FNBN]
157475
157402
-
Gly
TCC
[ENA]
¡û
>W1710559147
FOMK01000013
Bacteroidota
Chitinophaga sp. CF118 [FOMK]
31180
31253
+
Gly
TCC
[ENA]
¡û
>W1710573748
FOXS01000005
Bacteroidota
Hymenobacter arizonensis [FOXS]
88631
88706
+
Gly
TCC
[ENA]
¡û
>W1710579995
FPIZ01000007
Bacteroidota
Chitinophaga sancti [FPIZ]
268734
268807
+
Gly
TCC
[ENA]
¡û
>W1710591032
FRBL01000006
Bacteroidota
Chitinophaga jiangningensis [FRBL]
351929
352002
+
Gly
TCC
[ENA]
¡û
>W1710592510
FRCN01000004
Bacteroidota
Chitinophaga sp. CF418 [FRCN]
186021
185948
-
Gly
TCC
[ENA]
¡û
>W1710594109
FSRA01000001
Bacteroidota
Chitinophaga niabensis [FSRA]
3723382
3723309
-
Gly
TCC
[ENA]
¡û
>W1710601058
FUWZ01000001
Bacteroidota
Chitinophaga eiseniae [FUWZ]
423774
423847
+
Gly
TCC
[ENA]
¡û
>W1710604519
FUZZ01000002
Bacteroidota
Chitinophaga ginsengisegetis [FUZZ]
805194
805121
-
Gly
TCC
[ENA]
¡û
>W1710691834
JZQW01000054
Bacteroidota
Candidatus Parvibacillus calidus OLB8 [JZQW]
41180
41105
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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