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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298447 (107 seq.)
>W1710821468
LKTL01000006
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
109807
109883
+
Met
CAT
[ENA]
¡û
>W1711232937
LYBM01000058
Gammaproteobacteria
Veronia pacifica pacificus [LYBM]
81
157
+
Met
CAT
[ENA]
¡û
>W1711232949
LYBM01000129
Gammaproteobacteria
Veronia pacifica pacificus [LYBM]
13
89
+
Met
CAT
[ENA]
¡û
>W1711232950
LYBM01000129
Gammaproteobacteria
Veronia pacifica pacificus [LYBM]
205
281
+
Met
CAT
[ENA]
¡û
>W1711232956
LYBM01000149
Gammaproteobacteria
Veronia pacifica pacificus [LYBM]
242
166
-
Met
CAT
[ENA]
¡û
>W1711232961
LYBM01000159
Gammaproteobacteria
Veronia pacifica pacificus [LYBM]
45
121
+
Met
CAT
[ENA]
¡û
>W1711273514
LZFW01000006
Gammaproteobacteria
Vibrio sp. UCD-FRSSP16_30 [LZFW]
34058
33982
-
Met
CAT
[ENA]
¡û
>W1711273588
LZFW01000084
Gammaproteobacteria
Vibrio sp. UCD-FRSSP16_30 [LZFW]
112229
112153
-
Met
CAT
[ENA]
¡û
>W1711273621
LZFX01000007
Gammaproteobacteria
Vibrio sp. UCD-FRSSP16_10 [LZFX]
34058
33982
-
Met
CAT
[ENA]
¡û
>W1711273691
LZFX01000080
Gammaproteobacteria
Vibrio sp. UCD-FRSSP16_10 [LZFX]
112225
112149
-
Met
CAT
[ENA]
¡û
>W1711340590
MCBT01000041
Gammaproteobacteria
Shewanella colwelliana [MCBT]
40032
40108
+
Met
CAT
[ENA]
¡û
>W1711608779
MOSG01000040
Gammaproteobacteria
Proteus sp. H24 [MOSG]
32648
32572
-
Met
CAT
[ENA]
¡û
>W1711624456
MPHJ01000006
Gammaproteobacteria
Shewanella sp. UCD-KL12 [MPHJ]
195766
195690
-
Met
CAT
[ENA]
¡û
>W1711624610
MPHK01000023
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
55614
55690
+
Met
CAT
[ENA]
¡û
>W1711624704
MPHM01000002
Gammaproteobacteria
Vibrio ostreicida [MPHM]
156816
156892
+
Met
CAT
[ENA]
¡û
>W1711624756
MPHM01000022
Gammaproteobacteria
Vibrio ostreicida [MPHM]
26883
26959
+
Met
CAT
[ENA]
¡û
>W1711624758
MPHM01000022
Gammaproteobacteria
Vibrio ostreicida [MPHM]
27121
27197
+
Met
CAT
[ENA]
¡û
>W1711624760
MPHM01000022
Gammaproteobacteria
Vibrio ostreicida [MPHM]
27359
27435
+
Met
CAT
[ENA]
¡û
>W1711624762
MPHM01000022
Gammaproteobacteria
Vibrio ostreicida [MPHM]
27597
27673
+
Met
CAT
[ENA]
¡û
>W131188194
ASAJ01000009
Gammaproteobacteria
Vibrio gazogenes ATCC 43941 [ASAJ]
150803
150879
+
Met
CAT
[ENA]
¡û
>W131188196
ASAJ01000010
Gammaproteobacteria
Vibrio gazogenes ATCC 43941 [ASAJ]
101298
101222
-
Met
CAT
[ENA]
¡û
>W1711685080
MSAL01000012
Gammaproteobacteria
Vibrio parahaemolyticus [MSAL]
27917
27841
-
Met
CAT
[ENA]
¡û
>C020926
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
1144345
1144421
+
Met
CAT
[Ensembl]
¡û
>C022713
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
3355026
3354950
-
Met
CAT
[Ensembl]
¡û
>w021136
AAVJ01000068
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [AAVJ]
974
1052
+
Met
CAT
[ENA]
¡û
>w019942
AAUO01000001
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [AAUO]
94192
94268
+
Met
CAT
[ENA]
¡û
>C171085093
CP018835
Gammaproteobacteria
Vibrio gazogenes ATCC 43942 [CP018835, CP018836]
2589070
2589146
+
Met
CAT
-
¡û
>C171108607
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
3753990
3753914
-
Met
CAT
-
¡û
>WENV180080672
MPMC02041832
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
391
465
+
fMet
CAT
[ENA]
¢þ
>w007688
AAIU01000035
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
21837
21764
-
Met
CAT
[ENA]
¡û
>W141024338
AKKL01000037
Gammaproteobacteria
Providencia burhodogranariea DSM 19968 [AKKL]
125579
125503
-
Met
CAT
[ENA]
¡û
>C08010587
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
4134655
4134582
-
Met
CAT
[Ensembl]
¡û
>W141232567
BAVF01000032
Gammaproteobacteria
Vibrio parahaemolyticus TUMSAT_DE1_S1 [BAVF]
104389
104465
+
Met
CAT
[ENA]
¡û
>C08010203
CP000851
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [CP000851]
3758059
3757986
-
Met
CAT
[Ensembl]
¡û
>C08009893
CP000931
Gammaproteobacteria
Shewanella halifaxensis HAW-EB4 [CP000931]
3846301
3846228
-
Met
CAT
[Ensembl]
¡û
>W141276577
JADX01000012
Gammaproteobacteria
Shewanella fidelis ATCC BAA-318 [JADX]
115779
115703
-
Met
CAT
[ENA]
¡û
>W141276821
JAEC01000013
Gammaproteobacteria
Shewanella colwelliana ATCC 39565 [JAEC]
38336
38412
+
Met
CAT
[ENA]
¡û
>W141277082
JAEH01000068
Gammaproteobacteria
Shewanella waksmanii ATCC BAA-643 [JAEH]
7349
7425
+
Met
CAT
[ENA]
¡û
>C08010785
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
4351793
4351720
-
Met
CAT
[Ensembl]
¡û
>WENV170023596
BCQL01000202
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
9684
9760
+
Met
CAT
[ENA]
¢þ
>WENV170704221
LLEJ01000129
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
9245
9169
-
Met
CAT
[ENA]
¢þ
>C181005215
AP018680
Gammaproteobacteria
Vibrio casei DSM 22364 [AP018680, AP018681]
2007636
2007560
-
Met
CAT
-
¡û
>C181061301
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
1166828
1166904
+
Met
CAT
-
¡û
>C191042016
CP026364
Gammaproteobacteria
Proteus hauseri 15H5D-4a [CP026364]
1857620
1857696
+
Met
CAT
-
¡û
>C191100223
CP033078
Gammaproteobacteria
Vibrio zhugei HBUAS61001 [CP033077, CP033078]
265622
265698
+
Met
CAT
-
¡û
>C191187186
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
1103889
1103965
+
Met
CAT
-
¡û
>W141562265
JHZA01000016
Gammaproteobacteria
Enterovibrio calviensis DSM 14347 [JHZA]
27514
27438
-
Met
CAT
[ENA]
¡û
>W141778798
JONH01000010
Gammaproteobacteria
Vibrio pacinii DSM 19139 [JONH]
181415
181339
-
Met
CAT
[ENA]
¡û
>W141805641
JPKU01000010
Gammaproteobacteria
Vibrio parahaemolyticus [JPKU]
104268
104344
+
Met
CAT
[ENA]
¡û
>W141806038
JPLV01000018
Gammaproteobacteria
Vibrio parahaemolyticus [JPLV]
44577
44653
+
Met
CAT
[ENA]
¡û
>W09104511
AALS01000061
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
17092
17016
-
Met
CAT
[ENA]
¡û
>W1910339119
FSSB01000011
Gammaproteobacteria
Vibrio spartinae CECT 9026 [FSSB]
151462
151538
+
Met
CAT
[ENA]
¡û
>W1910377854
FUKS01000046
Gammaproteobacteria
Vibrio casei JB196 [FUKS]
186079
186003
-
Met
CAT
[ENA]
¡û
>W1910378463
FULE01000009
Gammaproteobacteria
Vibrio ruber DSM 16370 CECT 7878 [FULE]
97862
97786
-
Met
CAT
[ENA]
¡û
>W1910378542
FULF01000012
Gammaproteobacteria
Vibrio gazogenes type strain: CECT 5068 [FULF]
88917
88993
+
Met
CAT
[ENA]
¡û
>W1910675751
MCTH01000193
Gammaproteobacteria
Vibrio breoganii 10N.286.54.C10 [MCTH]
10428
10352
-
Met
CAT
[ENA]
¡û
>W1910676771
MCTV01000068
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
54345
54421
+
Met
CAT
[ENA]
¡û
>W1910676908
MCTY01000011
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
1600
1676
+
Met
CAT
[ENA]
¡û
>W1910677446
MCUF01000021
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
26106
26182
+
Met
CAT
[ENA]
¡û
>W1910678534
MCUT01000083
Gammaproteobacteria
Vibrio sp. 10N.286.49.C2 [MCUT]
210059
210135
+
Met
CAT
[ENA]
¡û
>W1910678719
MCUW01000007
Gammaproteobacteria
Vibrio sp. 10N.286.49.B1 [MCUW]
199322
199398
+
Met
CAT
[ENA]
¡û
>W1910679082
MCVB01000058
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.48.F3 [MCVB]
30643
30567
-
Met
CAT
[ENA]
¡û
>W1910679462
MCVF01000412
Gammaproteobacteria
Vibrio sp. 10N.286.48.B7 [MCVF]
28029
27953
-
Met
CAT
[ENA]
¡û
>W1910679514
MCVG01000125
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
18938
18862
-
Met
CAT
[ENA]
¡û
>W1910679667
MCVI01000021
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
156334
156258
-
Met
CAT
[ENA]
¡û
>W1910680208
MCVQ01000042
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.46.C4 [MCVQ]
42894
42818
-
Met
CAT
[ENA]
¡û
>W1910680306
MCVR01000087
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.46.C3 [MCVR]
55414
55338
-
Met
CAT
[ENA]
¡û
>W1910685819
MCYQ01000017
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.49.F5 [MCYQ]
129743
129819
+
Met
CAT
[ENA]
¡û
>W1910688629
MDAD01000043
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.C6 [MDAD]
128683
128759
+
Met
CAT
[ENA]
¡û
>W1910688880
MDAG01000021
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.B2 [MDAG]
78421
78345
-
Met
CAT
[ENA]
¡û
>W1910689268
MDAL01000019
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.A10 [MDAL]
29493
29417
-
Met
CAT
[ENA]
¡û
>W1910690656
MDBD01000063
Gammaproteobacteria
Vibrio breoganii 10N.222.51.C2 [MDBD]
41284
41208
-
Met
CAT
[ENA]
¡û
>W1910934190
NIVQ01000003
Gammaproteobacteria
Vibrio salilacus DSG-S6 [NIVQ]
49597
49673
+
Met
CAT
[ENA]
¡û
>W1911551686
OXJV01000018
Gammaproteobacteria
Shewanella algidipiscicola [OXJV]
61528
61452
-
Met
CAT
[ENA]
¡û
>W1911578708
PEIB01000045
Gammaproteobacteria
Veronia nyctiphanis CAIM 600 [PEIB]
31410
31334
-
Met
CAT
[ENA]
¡û
>W1911581895
PGVH01000007
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
23553
23477
-
Met
CAT
[ENA]
¡û
>W1911710059
QPQT01000008
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
128015
127939
-
Met
CAT
[ENA]
¡û
>W1911710107
QPQU01000005
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
171227
171303
+
Met
CAT
[ENA]
¡û
>W1911799984
QYSS01000006
Gammaproteobacteria
Vibrio parahaemolyticus Vp23 [QYSS]
104353
104429
+
Met
CAT
[ENA]
¡û
>W1810005666
BFBQ01000004
Gammaproteobacteria
Shewanella halifaxensis 6JANF4-E-4 [BFBQ]
198964
199040
+
Met
CAT
[ENA]
¡û
>W1810058454
PDJL01000004
Gammaproteobacteria
Vibrio sp. ES.051 [PDJL]
463962
464038
+
Met
CAT
[ENA]
¡û
>W1810085748
PFXK01000009
Gammaproteobacteria
Vibrio sp. HA2012 [PFXK]
111266
111342
+
Met
CAT
[ENA]
¡û
>W1810107165
PGWU01000005
Gammaproteobacteria
Proteus hauseri JCM 1668 [PGWU]
124926
125002
+
Met
CAT
[ENA]
¡û
>W1810405821
PYMB01000018
Gammaproteobacteria
Photobacterium rosenbergii DSM 19138 [PYMB]
6912
6836
-
Met
CAT
[ENA]
¡û
>W1810405996
PYMC01000010
Gammaproteobacteria
Photobacterium lipolyticum DSM 16190 [PYMC]
29378
29302
-
Met
CAT
[ENA]
¡û
>W1810756985
QPGL01000001
Gammaproteobacteria
Vibrio casei JB196 [QPGL]
749278
749354
+
Met
CAT
[ENA]
¡û
>W1511302128
JPII01000016
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
110164
110240
+
Met
CAT
[ENA]
¡û
>W1511366755
JSFF01000001
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
105890
105966
+
Met
CAT
[ENA]
¡û
>W1511402710
JTKH01000021
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-2 [JTKH]
68873
68797
-
Met
CAT
[ENA]
¡û
>W1511402780
JTKI01000015
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-12 [JTKI]
150306
150382
+
Met
CAT
[ENA]
¡û
>W121070257
AJWN01000096
Gammaproteobacteria
Enterovibrio norvegicus FF-454 [AJWN]
29203
29127
-
Met
CAT
[ENA]
¡û
>W121071659
AJYD01000059
Gammaproteobacteria
Enterovibrio norvegicus FF-33 [AJYD]
126951
127027
+
Met
CAT
[ENA]
¡û
>W121071723
AJYE01000114
Gammaproteobacteria
Enterovibrio norvegicus FF-162 [AJYE]
63623
63699
+
Met
CAT
[ENA]
¡û
>W121071770
AJYF01000082
Gammaproteobacteria
Enterovibrio norvegicus FF-85 [AJYF]
29554
29630
+
Met
CAT
[ENA]
¡û
>W121071806
AJYG01000003
Gammaproteobacteria
Enterovibrio norvegicus 1F-211 [AJYG]
45846
45922
+
Met
CAT
[ENA]
¡û
>W121071899
AJYH01000194
Gammaproteobacteria
Enterovibrio norvegicus 1F-230 [AJYH]
30103
30027
-
Met
CAT
[ENA]
¡û
>W1610460590
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
266437
266361
-
Met
CAT
[ENA]
¡û
>W1610685430
LKTL01000006
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
109807
109883
+
Met
CAT
[ENA]
¡û
>W1610994815
LXEV01000011
Gammaproteobacteria
Proteus hauseri ATCC 700826 [LXEV]
124452
124528
+
Met
CAT
[ENA]
¡û
>W1611032863
LZFW01000006
Gammaproteobacteria
Vibrio sp. UCD-FRSSP16_30 [LZFW]
34058
33982
-
Met
CAT
[ENA]
¡û
>W1611032937
LZFW01000084
Gammaproteobacteria
Vibrio sp. UCD-FRSSP16_30 [LZFW]
112229
112153
-
Met
CAT
[ENA]
¡û
>W1611032970
LZFX01000007
Gammaproteobacteria
Vibrio sp. UCD-FRSSP16_10 [LZFX]
34058
33982
-
Met
CAT
[ENA]
¡û
>W1611033040
LZFX01000080
Gammaproteobacteria
Vibrio sp. UCD-FRSSP16_10 [LZFX]
112225
112149
-
Met
CAT
[ENA]
¡û
>W1710087709
BDSD01000052
Gammaproteobacteria
Vibrio casei [BDSD]
40151
40227
+
Met
CAT
[ENA]
¡û
>W1710460154
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
266437
266361
-
Met
CAT
[ENA]
¡û
>W1710572417
FOWR01000011
Gammaproteobacteria
Enterovibrio norvegicus DSM 15893 [FOWR]
17133
17057
-
Met
CAT
[ENA]
¡û
>W1710582843
FQUH01000016
Gammaproteobacteria
Vibrio gazogenes DSM 21264 [FQUH]
100562
100486
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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